Wall clock time and date at job start Mon Mar 30 2020 02:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34086 * 126.10661 * 2 1 4 4 O 1.35106 * 107.27699 * 179.78338 * 3 2 1 5 5 C 1.34204 * 107.75175 * 0.38088 * 4 3 2 6 6 N 1.38167 * 125.71552 * 179.87503 * 5 4 3 7 7 C 1.46499 * 119.99761 * 359.69597 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00420 * 13 11 9 16 16 H 1.48498 * 109.46942 * 240.00334 * 13 11 9 17 17 N 1.31054 * 108.57605 * 359.61447 * 5 4 3 18 18 H 1.09002 * 109.47156 * 270.00530 * 1 2 3 19 19 H 1.09004 * 109.46868 * 30.00215 * 1 2 3 20 20 H 1.09004 * 109.47195 * 150.00306 * 1 2 3 21 21 H 1.07997 * 126.35892 * 0.04101 * 3 2 1 22 22 H 0.97000 * 119.99819 * 179.68870 * 6 5 4 23 23 H 1.09002 * 109.47391 * 59.99715 * 7 6 5 24 24 H 1.09001 * 109.46813 * 299.99771 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 27 27 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.0833 0.0000 4 8 3.5759 0.6473 0.0049 5 6 3.5507 -0.6945 -0.0007 6 7 4.6571 -1.5220 -0.0008 7 6 6.0036 -0.9447 -0.0011 8 6 7.0407 -2.0695 -0.0017 9 6 8.4258 -1.4756 -0.0026 10 1 8.5535 -0.4031 -0.0024 11 6 9.5299 -2.3013 -0.0028 12 7 9.3745 -3.6072 -0.0027 13 14 11.2468 -1.5651 -0.0047 14 1 11.1499 -0.0833 -0.0052 15 1 11.9786 -2.0126 1.2076 16 1 11.9766 -2.0144 -1.2174 17 7 2.3008 -1.0886 -0.0004 18 1 -0.3633 0.0001 1.0277 19 1 -0.3633 0.8900 -0.5139 20 1 -0.3634 -0.8900 -0.5138 21 1 1.9718 2.1131 0.0006 22 1 4.5424 -2.4852 -0.0005 23 1 6.1352 -0.3291 0.8888 24 1 6.1348 -0.3294 -0.8912 25 1 6.9096 -2.6851 0.8882 26 1 6.9090 -2.6847 -0.8917 27 1 10.1512 -4.1882 -0.0024 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307075734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:58 Heat of formation + Delta-G solvation = 14.434424 kcal Electronic energy + Delta-G solvation = -11663.820229 eV Core-core repulsion = 9423.149230 eV Total energy + Delta-G solvation = -2240.670999 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.74385 -36.08917 -34.71557 -33.14332 -31.06663 -29.16314 -26.62482 -24.65627 -21.76269 -21.40325 -20.21507 -17.51689 -16.41343 -16.32811 -15.72502 -14.84834 -14.44588 -13.96053 -13.52609 -13.19432 -12.86266 -12.32293 -11.95024 -11.34719 -11.29153 -10.93482 -10.67154 -10.41714 -10.04580 -9.72145 -9.44902 -9.35630 -8.49081 -7.35406 -6.14220 -4.18082 2.00748 2.69171 3.14696 3.25132 3.32890 3.36912 3.81722 4.37480 4.96414 5.11583 5.22952 5.52585 5.60718 5.80929 5.86219 6.14715 6.19202 6.25848 6.54489 6.58572 7.15028 7.47313 7.53608 7.80615 7.83590 8.18874 8.44124 8.87586 9.47075 10.97369 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.108880 B = 0.006006 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.102421 B = 4660.676415 C = 4892.029161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.016 3.984 3 C -0.135 4.135 4 O -0.225 6.225 5 C 0.473 3.527 6 N -0.677 5.677 7 C 0.126 3.874 8 C 0.013 3.987 9 C -0.524 4.524 10 H 0.060 0.940 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.898 3.102 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.560 5.560 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.206 0.794 22 H 0.427 0.573 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 7.043 0.000 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.207 4.207 4 O -0.113 6.113 5 C 0.174 3.826 6 N -0.326 5.326 7 C 0.004 3.996 8 C -0.024 4.024 9 C -0.562 4.562 10 H 0.078 0.922 11 C -0.143 4.143 12 N -0.530 5.530 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.301 5.301 18 H 0.089 0.911 19 H 0.089 0.911 20 H 0.091 0.909 21 H 0.223 0.777 22 H 0.267 0.733 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.229 6.452 0.000 13.826 hybrid contribution 1.207 0.703 0.012 1.397 sum -11.021 7.156 0.012 13.141 Atomic orbital electron populations 1.20047 0.87204 1.02854 1.02440 1.21466 0.97420 0.88387 1.03086 1.24095 0.79263 1.00224 1.17098 1.84421 1.31013 1.21895 1.73934 1.21851 0.88493 0.78396 0.93900 1.44037 1.01349 1.06987 1.80267 1.21898 0.78371 0.98892 1.00455 1.19312 0.92016 0.92740 0.98355 1.21031 0.90150 0.93262 1.51806 0.92153 1.25002 0.99564 0.94816 0.94887 1.69963 1.30401 1.02617 1.50011 0.86439 0.83925 0.79400 0.77683 1.19598 1.20884 1.20878 1.70795 0.98073 1.29908 1.31370 0.91057 0.91092 0.90906 0.77746 0.73273 0.92651 0.92650 0.95538 0.95533 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.42 36.01 0.38 -0.33 15 2 C 0.02 0.23 7.10 -82.78 -0.59 -0.35 15 3 C -0.14 -1.94 12.07 29.27 0.35 -1.59 15 4 O -0.22 -4.03 10.50 3.72 0.04 -3.99 15 5 C 0.47 8.87 8.98 -86.98 -0.78 8.09 15 6 N -0.68 -12.66 5.69 -62.30 -0.35 -13.01 15 7 C 0.13 2.59 5.99 -4.04 -0.02 2.57 15 8 C 0.01 0.32 5.09 -27.88 -0.14 0.18 15 9 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 12 N -0.89 -25.88 13.29 55.43 0.74 -25.14 15 13 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 15 14 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 N -0.56 -10.22 11.34 -10.67 -0.12 -10.34 15 18 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 19 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.21 2.00 8.06 -52.49 -0.42 1.58 15 22 H 0.43 7.51 8.60 -40.82 -0.35 7.15 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 15 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 245.60 15.07 3.70 3.70 Total: -1.00 -30.43 245.60 -5.51 -35.95 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -3.27 Total: 1.22 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.22 Total: -4.42 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.26 Total: -48.49 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.43 -5.51 -35.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307075734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.380 kcal (2) G-P(sol) polarization free energy of solvation -30.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds