Wall clock time and date at job start Mon Mar 30 2020 02:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34086 * 126.10661 * 2 1 4 4 O 1.35106 * 107.27699 * 179.78338 * 3 2 1 5 5 C 1.34204 * 107.75175 * 0.38088 * 4 3 2 6 6 N 1.38167 * 125.71552 * 179.87503 * 5 4 3 7 7 C 1.46499 * 119.99761 * 359.69597 * 6 5 4 8 8 C 1.53000 * 109.46840 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46999 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46979 * 120.00420 * 13 11 9 16 16 H 1.48498 * 109.46942 * 240.00334 * 13 11 9 17 17 N 1.31054 * 108.57605 * 359.61447 * 5 4 3 18 18 H 1.09002 * 109.47156 * 270.00530 * 1 2 3 19 19 H 1.09004 * 109.46868 * 30.00215 * 1 2 3 20 20 H 1.09004 * 109.47195 * 150.00306 * 1 2 3 21 21 H 1.07997 * 126.35892 * 0.04101 * 3 2 1 22 22 H 0.97000 * 119.99819 * 179.68870 * 6 5 4 23 23 H 1.09002 * 109.47391 * 59.99715 * 7 6 5 24 24 H 1.09001 * 109.46813 * 299.99771 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99666 * 8 7 6 27 27 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.0833 0.0000 4 8 3.5759 0.6473 0.0049 5 6 3.5507 -0.6945 -0.0007 6 7 4.6571 -1.5220 -0.0008 7 6 6.0036 -0.9447 -0.0011 8 6 7.0407 -2.0695 -0.0017 9 6 8.4258 -1.4756 -0.0026 10 1 8.5535 -0.4031 -0.0024 11 6 9.5299 -2.3013 -0.0028 12 7 9.3745 -3.6072 -0.0027 13 14 11.2468 -1.5651 -0.0047 14 1 11.1499 -0.0833 -0.0052 15 1 11.9786 -2.0126 1.2076 16 1 11.9766 -2.0144 -1.2174 17 7 2.3008 -1.0886 -0.0004 18 1 -0.3633 0.0001 1.0277 19 1 -0.3633 0.8900 -0.5139 20 1 -0.3634 -0.8900 -0.5138 21 1 1.9718 2.1131 0.0006 22 1 4.5424 -2.4852 -0.0005 23 1 6.1352 -0.3291 0.8888 24 1 6.1348 -0.3294 -0.8912 25 1 6.9096 -2.6851 0.8882 26 1 6.9090 -2.6847 -0.8917 27 1 10.1512 -4.1882 -0.0024 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307075734.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:57 Heat of formation + Delta-G solvation = -8.106103 kcal Electronic energy + Delta-G solvation = -11664.797660 eV Core-core repulsion = 9423.149230 eV Total energy + Delta-G solvation = -2241.648430 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.02974 -37.67741 -35.96636 -35.10793 -32.53902 -30.72484 -27.77447 -26.51657 -23.33733 -22.93534 -21.57789 -19.04185 -18.21554 -17.74928 -17.09279 -16.46015 -16.14516 -15.66403 -14.84049 -14.29714 -14.06044 -13.80089 -13.28282 -13.14874 -12.87744 -12.62080 -12.49892 -11.97345 -11.66565 -11.40301 -11.34096 -10.84463 -10.57498 -8.67550 -8.25077 -6.36288 0.77668 1.34427 1.41882 1.43575 1.55918 1.86367 2.37467 2.57216 3.10330 3.84422 4.08116 4.32394 4.41722 4.53931 4.77140 4.86380 4.97420 4.98408 5.05771 5.36242 5.52616 5.53515 5.66905 5.85093 6.12050 6.41188 6.78027 7.09618 7.33499 8.87385 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.108880 B = 0.006006 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.102421 B = 4660.676415 C = 4892.029161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.008 4.008 3 C -0.125 4.125 4 O -0.240 6.240 5 C 0.449 3.551 6 N -0.681 5.681 7 C 0.149 3.851 8 C 0.021 3.979 9 C -0.544 4.544 10 H 0.066 0.934 11 C 0.004 3.996 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.279 1.279 16 H -0.278 1.278 17 N -0.576 5.576 18 H 0.084 0.916 19 H 0.102 0.898 20 H 0.067 0.933 21 H 0.252 0.748 22 H 0.429 0.571 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 8.863 -0.004 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.126 4.126 3 C -0.195 4.195 4 O -0.128 6.128 5 C 0.150 3.850 6 N -0.331 5.331 7 C 0.026 3.974 8 C -0.017 4.017 9 C -0.582 4.582 10 H 0.084 0.916 11 C -0.195 4.195 12 N -0.568 5.568 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.204 1.204 16 H -0.204 1.204 17 N -0.319 5.319 18 H 0.102 0.898 19 H 0.121 0.879 20 H 0.086 0.914 21 H 0.268 0.732 22 H 0.269 0.731 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.914 8.294 -0.003 15.347 hybrid contribution 1.274 0.171 0.014 1.285 sum -11.640 8.464 0.011 14.392 Atomic orbital electron populations 1.20198 0.84005 1.04220 1.03689 1.22247 0.99448 0.87629 1.03262 1.25093 0.77773 1.02070 1.14527 1.84424 1.33013 1.21484 1.73871 1.21880 0.88501 0.78860 0.95718 1.43725 1.00921 1.07136 1.81343 1.21434 0.78435 0.97091 1.00443 1.19124 0.92672 0.93415 0.96455 1.21473 0.91491 0.93752 1.51482 0.91568 1.25929 1.03932 0.95181 0.94419 1.70081 1.31717 1.04028 1.51010 0.85343 0.78609 0.79018 0.77747 1.18475 1.20423 1.20416 1.70781 0.98306 1.31768 1.31021 0.89763 0.87931 0.91370 0.73214 0.73078 0.92599 0.92595 0.97414 0.97406 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.14 10.42 71.24 0.74 -0.40 15 2 C -0.01 -0.21 7.10 41.17 0.29 0.08 15 3 C -0.12 -3.23 12.07 66.87 0.81 -2.43 15 4 O -0.24 -8.27 10.50 -9.62 -0.10 -8.37 15 5 C 0.45 16.70 8.98 179.08 1.61 18.31 15 6 N -0.68 -25.83 5.69 -461.47 -2.63 -28.46 15 7 C 0.15 6.18 5.99 86.38 0.52 6.70 15 8 C 0.02 1.05 5.09 29.85 0.15 1.20 15 9 C -0.54 -29.69 9.11 25.60 0.23 -29.46 15 10 H 0.07 3.45 7.74 -2.91 -0.02 3.43 15 11 C 0.00 0.23 5.46 84.66 0.46 0.69 15 12 N -0.93 -54.66 13.29 21.45 0.28 -54.38 15 13 Si 0.97 42.97 29.54 68.60 2.03 45.00 15 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 15 H -0.28 -12.09 7.11 99.48 0.71 -11.39 15 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 17 N -0.58 -20.63 11.34 -301.93 -3.43 -24.05 15 18 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 19 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.07 1.28 8.14 -2.38 -0.02 1.26 15 21 H 0.25 3.75 8.06 -2.91 -0.02 3.73 15 22 H 0.43 15.57 8.60 -92.71 -0.80 14.78 15 23 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 15 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -65.18 245.60 1.34 -63.84 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.37 Total: 11.73 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 4.82 Total: -5.30 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -5.77 Total: -106.89 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.10 Total: -8.37 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -65.18 1.34 -63.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307075734.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds