Wall clock time and date at job start Mon Mar 30 2020 01:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00196 * 2 1 4 4 H 1.48495 * 109.47364 * 239.99979 * 3 2 1 5 5 H 1.48504 * 109.47122 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47446 * 119.99859 * 3 2 1 7 7 C 1.37879 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00375 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99803 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.87375 * 303.78573 * 9 7 2 11 11 C 1.56169 * 110.98442 * 67.60205 * 9 7 2 12 12 H 1.08995 * 115.65755 * 316.86067 * 11 9 7 13 13 C 1.53082 * 105.09905 * 187.19190 * 11 9 7 14 14 C 1.32221 * 106.49762 * 287.52059 * 13 11 9 15 15 C 1.53085 * 106.49574 * 359.97438 * 14 13 11 16 16 H 1.08999 * 116.27807 * 201.78223 * 15 14 13 17 17 O 1.46796 * 100.57315 * 327.91628 * 15 14 13 18 18 C 1.55233 * 110.95867 * 180.02562 * 9 7 2 19 19 H 1.09002 * 110.96102 * 123.73675 * 18 9 7 20 20 C 1.52995 * 110.95911 * 0.03744 * 18 9 7 21 21 O 1.42901 * 109.47072 * 178.06422 * 20 18 9 22 22 H 0.97000 * 119.99855 * 359.97438 * 1 2 3 23 23 H 1.07999 * 126.74837 * 107.54904 * 13 11 9 24 24 H 1.07993 * 126.75097 * 180.02562 * 14 13 11 25 25 H 1.09006 * 109.47460 * 298.06241 * 20 18 9 26 26 H 1.08998 * 109.47762 * 58.06615 * 20 18 9 27 27 H 0.96702 * 114.00141 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.5660 -2.5522 0.8468 11 6 0.4907 -2.7060 -1.3478 12 1 -0.0270 -1.8293 -1.7370 13 6 -0.3631 -3.9589 -1.1361 14 6 0.4703 -4.9854 -1.1350 15 6 1.8720 -4.4075 -1.3467 16 1 2.6238 -5.0949 -1.7344 17 8 1.5609 -3.2495 -2.1935 18 6 2.2287 -3.7049 0.0018 19 1 2.0346 -4.3635 0.8484 20 6 3.6831 -3.2301 0.0037 21 8 4.5538 -4.3623 0.0503 22 1 -0.4850 0.8401 0.0004 23 1 -1.4353 -3.9968 -1.0124 24 1 0.2127 -6.0267 -1.0103 25 1 3.8797 -2.6577 -0.9030 26 1 3.8588 -2.6005 0.8760 27 1 5.4939 -4.1357 0.0537 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307183045.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:17 Heat of formation + Delta-G solvation = -67.736112 kcal Electronic energy + Delta-G solvation = -12869.056030 eV Core-core repulsion = 10592.529098 eV Total energy + Delta-G solvation = -2276.526932 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.99575 -37.56414 -35.14583 -33.06046 -32.41040 -29.94826 -26.63174 -26.00247 -22.39307 -21.03500 -19.96093 -18.59463 -18.05462 -17.31532 -16.90869 -16.38268 -15.16715 -14.92250 -14.52925 -14.09378 -13.62841 -13.16890 -13.04811 -12.78141 -12.39676 -12.30445 -12.22427 -11.92517 -11.40755 -10.99009 -10.71853 -10.64786 -10.45829 -9.80625 -8.15537 -6.23081 1.26524 1.42250 1.43835 1.50254 2.42467 3.12877 3.32101 3.48270 3.87042 4.00202 4.02550 4.25825 4.44639 4.61156 4.71743 4.89347 5.02716 5.07010 5.18447 5.22185 5.35382 5.46466 5.66211 5.82986 6.06455 6.29079 6.80372 6.99380 7.43408 8.93891 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.036334 B = 0.015810 C = 0.012075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.447013 B = 1770.638473 C = 2318.316918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.017 0.983 11 C 0.091 3.909 12 H 0.100 0.900 13 C -0.188 4.188 14 C -0.190 4.190 15 C 0.088 3.912 16 H 0.137 0.863 17 O -0.399 6.399 18 C -0.108 4.108 19 H 0.073 0.927 20 C 0.110 3.890 21 O -0.590 6.590 22 H 0.262 0.738 23 H 0.149 0.851 24 H 0.169 0.831 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.929 -6.649 -0.415 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.018 3.982 10 H 0.035 0.965 11 C 0.033 3.967 12 H 0.118 0.882 13 C -0.206 4.206 14 C -0.208 4.208 15 C 0.031 3.969 16 H 0.154 0.846 17 O -0.319 6.319 18 C -0.127 4.127 19 H 0.091 0.909 20 C 0.033 3.967 21 O -0.398 6.398 22 H 0.071 0.929 23 H 0.166 0.834 24 H 0.187 0.813 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.325 -6.741 -0.632 7.542 hybrid contribution 0.431 1.445 0.213 1.523 sum 3.756 -5.295 -0.419 6.505 Atomic orbital electron populations 1.70038 1.07199 1.27557 1.51062 1.25764 0.95688 1.02418 0.94680 0.85693 0.78504 0.79175 0.78834 1.19960 1.21048 1.19245 1.21570 0.93826 0.90846 1.50256 0.90986 1.20222 0.92772 0.92642 0.92566 0.96538 1.23889 0.86798 0.93901 0.92082 0.88228 1.25036 1.00071 0.95417 1.00075 1.24875 0.94429 0.99761 1.01746 1.23904 0.95646 0.87834 0.89494 0.84560 1.90266 1.54965 1.41404 1.45267 1.22756 0.94755 0.97814 0.97340 0.90905 1.21939 0.88902 0.86444 0.99447 1.86347 1.21187 1.34555 1.97688 0.92870 0.83356 0.81333 0.94241 0.93504 0.75882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.42 12.30 21.45 0.26 -52.16 15 2 C 0.01 0.74 5.35 84.66 0.45 1.19 15 3 Si 0.95 43.07 29.54 68.60 2.03 45.10 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 7 C -0.53 -28.44 7.79 25.60 0.20 -28.24 15 8 H 0.07 3.72 4.93 -2.91 -0.01 3.70 15 9 C 0.04 1.86 2.36 -9.67 -0.02 1.83 15 10 H 0.02 0.91 8.08 -2.39 -0.02 0.89 15 11 C 0.09 4.45 4.81 31.72 0.15 4.60 15 12 H 0.10 5.44 7.33 -2.39 -0.02 5.42 15 13 C -0.19 -7.49 10.44 25.43 0.27 -7.22 15 14 C -0.19 -6.70 10.44 25.43 0.27 -6.44 15 15 C 0.09 3.51 5.07 31.73 0.16 3.67 15 16 H 0.14 4.78 8.14 -2.39 -0.02 4.76 15 17 O -0.40 -19.23 11.85 -148.98 -1.77 -21.00 15 18 C -0.11 -4.59 2.81 -8.92 -0.03 -4.61 15 19 H 0.07 2.97 8.08 -2.39 -0.02 2.95 15 20 C 0.11 4.31 4.99 71.98 0.36 4.67 15 21 O -0.59 -19.12 13.58 -148.98 -2.02 -21.14 15 22 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.15 5.15 8.06 -2.91 -0.02 5.13 15 24 H 0.17 4.49 8.06 -2.91 -0.02 4.46 15 25 H 0.04 1.67 7.36 -2.38 -0.02 1.66 15 26 H 0.05 1.88 7.11 -2.39 -0.02 1.86 15 27 H 0.39 8.59 9.12 -74.06 -0.68 7.92 15 Total: -1.00 -62.71 227.21 0.81 -61.90 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.50 Total: 17.84 kcal Atomic # 6 Polarization: -32.35 SS G_CDS: 1.81 Total: -30.54 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.26 Total: -52.16 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -3.79 Total: -42.14 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -62.71 0.81 -61.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307183045.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.838 kcal (2) G-P(sol) polarization free energy of solvation -62.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds