Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36229 * 116.99927 * 2 1 4 4 C 1.40115 * 126.05249 * 0.02624 * 3 2 1 5 5 N 1.30873 * 108.35534 * 179.97438 * 4 3 2 6 6 N 1.40078 * 108.32279 * 0.02562 * 5 4 3 7 7 C 1.46501 * 126.07794 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46636 * 335.02008 * 7 6 5 9 9 C 1.53006 * 109.46989 * 215.02325 * 7 6 5 10 10 C 1.50700 * 109.47523 * 95.02023 * 7 6 5 11 11 H 1.08004 * 119.99757 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00061 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00341 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00082 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47117 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47251 * 119.99983 * 14 12 10 17 17 H 1.48501 * 109.47350 * 240.00656 * 14 12 10 18 18 C 1.35585 * 126.04933 * 180.02562 * 3 2 1 19 19 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47186 * 299.99808 * 1 2 3 21 21 H 1.09004 * 109.46837 * 59.99724 * 1 2 3 22 22 H 1.07996 * 125.82406 * 359.95821 * 4 3 2 23 23 H 1.08994 * 109.46783 * 179.97438 * 9 7 6 24 24 H 1.08998 * 109.46856 * 299.99798 * 9 7 6 25 25 H 1.09000 * 109.47302 * 59.99630 * 9 7 6 26 26 H 0.96996 * 120.00234 * 180.02562 * 13 12 10 27 27 H 1.08003 * 126.20967 * 359.75222 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.4125 2.4628 0.0005 5 7 2.3330 3.3931 0.0009 6 7 3.5880 2.7709 0.0000 7 6 4.8869 3.4484 -0.0004 8 1 4.7779 4.4425 -0.4340 9 6 5.8850 2.6372 -0.8291 10 6 5.3906 3.5701 1.4147 11 1 4.8022 3.1812 2.2326 12 6 6.6030 4.1769 1.6651 13 7 7.3197 4.6501 0.6691 14 14 7.2277 4.3271 3.4191 15 1 6.2422 3.7198 4.3492 16 1 8.5270 3.6192 3.5441 17 1 7.4106 5.7612 3.7584 18 6 3.3864 1.4271 -0.0005 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.3454 2.6295 0.0004 23 1 6.8512 3.1415 -0.8298 24 1 5.9939 1.6431 -0.3955 25 1 5.5207 2.5492 -1.8527 26 1 8.1728 5.0767 0.8452 27 1 4.1536 0.6669 0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307503952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = 37.041321 kcal Electronic energy + Delta-G solvation = -12211.541246 eV Core-core repulsion = 9971.850555 eV Total energy + Delta-G solvation = -2239.690690 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.44888 -37.45956 -34.51646 -31.63679 -29.35108 -27.99341 -26.39659 -25.38755 -22.40896 -20.13067 -19.54900 -17.36245 -16.54084 -15.25799 -15.01070 -14.69274 -14.27472 -13.72527 -13.54308 -12.68548 -12.03475 -11.79703 -11.51398 -11.16958 -11.05736 -10.90616 -10.71915 -10.43052 -10.28739 -9.84423 -9.48535 -8.63650 -8.47521 -7.13438 -6.25416 -4.35289 2.74470 3.19613 3.27627 3.31834 3.43370 3.46756 4.04139 4.29222 5.05782 5.34025 5.44242 5.45839 5.66565 5.77686 6.17306 6.33197 6.50854 6.65134 6.68884 6.89531 7.28478 7.49674 7.69011 7.92753 7.96491 8.10216 8.56121 8.71855 9.32051 10.79067 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.009174 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.411724 B = 3051.424429 C = 3205.031588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.313 6.313 3 C -0.068 4.068 4 C -0.034 4.034 5 N -0.279 5.279 6 N -0.314 5.314 7 C 0.279 3.721 8 H 0.063 0.937 9 C -0.151 4.151 10 C -0.530 4.530 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.908 3.092 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.037 3.963 19 H 0.088 0.912 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.170 0.830 23 H 0.107 0.893 24 H 0.040 0.960 25 H 0.022 0.978 26 H 0.267 0.733 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -6.131 -1.466 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C -0.122 4.122 4 C -0.218 4.218 5 N -0.105 5.105 6 N -0.100 5.100 7 C 0.181 3.819 8 H 0.081 0.919 9 C -0.209 4.209 10 C -0.569 4.569 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.112 4.112 19 H 0.106 0.894 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.187 0.813 23 H 0.125 0.875 24 H 0.059 0.941 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.715 -4.912 -1.506 8.455 hybrid contribution -0.075 -0.649 0.944 1.148 sum -6.791 -5.560 -0.563 8.795 Atomic orbital electron populations 1.22780 0.79850 1.02493 1.00521 1.85911 1.19712 1.24962 1.92063 1.18594 0.91619 0.84878 1.17109 1.23676 0.99373 0.90356 1.08352 1.77204 0.88958 1.22170 1.22202 1.49542 1.06353 1.02967 1.51098 1.19324 0.72626 0.92400 0.97578 0.91883 1.22165 1.03033 0.99932 0.95817 1.21343 1.04654 1.39577 0.91300 0.91696 1.24878 0.96043 0.94496 0.98119 1.69852 1.13620 1.38358 1.30830 0.86274 0.78677 0.77989 0.83585 1.19615 1.20652 1.20664 1.21452 0.94803 0.88141 1.06758 0.89354 0.93675 0.93726 0.81322 0.87518 0.94059 0.95928 0.92311 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.15 101.05 1.03 1.51 15 2 O -0.31 -5.44 10.59 -20.47 -0.22 -5.66 15 3 C -0.07 -1.34 6.96 -39.83 -0.28 -1.61 15 4 C -0.03 -0.67 11.07 -17.26 -0.19 -0.86 15 5 N -0.28 -6.46 12.57 30.68 0.39 -6.07 15 6 N -0.31 -7.43 3.54 -55.68 -0.20 -7.63 15 7 C 0.28 7.05 3.31 -69.08 -0.23 6.82 15 8 H 0.06 1.73 8.14 -51.93 -0.42 1.30 15 9 C -0.15 -3.44 8.62 37.16 0.32 -3.12 15 10 C -0.53 -14.40 8.84 -34.44 -0.30 -14.71 15 11 H 0.06 1.83 7.81 -52.48 -0.41 1.42 15 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 13 N -0.89 -23.98 11.32 55.43 0.63 -23.36 15 14 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 15 15 H -0.27 -6.29 7.11 56.52 0.40 -5.88 15 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 18 C 0.04 0.78 10.65 -16.71 -0.18 0.60 15 19 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.04 0.51 8.10 -51.93 -0.42 0.09 15 21 H 0.04 0.49 8.10 -51.93 -0.42 0.07 15 22 H 0.17 2.60 7.69 -52.49 -0.40 2.19 15 23 H 0.11 2.62 6.07 -51.93 -0.32 2.30 15 24 H 0.04 0.88 7.17 -51.93 -0.37 0.51 15 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 27 H 0.17 3.25 7.29 -52.48 -0.38 2.87 15 LS Contribution 238.74 15.07 3.60 3.60 Total: -1.00 -29.19 238.74 -3.88 -33.07 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.13 Total: -0.10 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.82 Total: -37.06 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.22 Total: -5.66 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.19 -3.88 -33.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.114 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds