Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36229 * 116.99927 * 2 1 4 4 C 1.40115 * 126.05249 * 0.02624 * 3 2 1 5 5 N 1.30873 * 108.35534 * 179.97438 * 4 3 2 6 6 N 1.40078 * 108.32279 * 0.02562 * 5 4 3 7 7 C 1.46501 * 126.07794 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.46636 * 335.02008 * 7 6 5 9 9 C 1.53006 * 109.46989 * 215.02325 * 7 6 5 10 10 C 1.50700 * 109.47523 * 95.02023 * 7 6 5 11 11 H 1.08004 * 119.99757 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00061 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00341 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00082 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47117 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47251 * 119.99983 * 14 12 10 17 17 H 1.48501 * 109.47350 * 240.00656 * 14 12 10 18 18 C 1.35585 * 126.04933 * 180.02562 * 3 2 1 19 19 H 1.09000 * 109.47424 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47186 * 299.99808 * 1 2 3 21 21 H 1.09004 * 109.46837 * 59.99724 * 1 2 3 22 22 H 1.07996 * 125.82406 * 359.95821 * 4 3 2 23 23 H 1.08994 * 109.46783 * 179.97438 * 9 7 6 24 24 H 1.08998 * 109.46856 * 299.99798 * 9 7 6 25 25 H 1.09000 * 109.47302 * 59.99630 * 9 7 6 26 26 H 0.96996 * 120.00234 * 180.02562 * 13 12 10 27 27 H 1.08003 * 126.20967 * 359.75222 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0475 1.2138 0.0000 4 6 1.4125 2.4628 0.0005 5 7 2.3330 3.3931 0.0009 6 7 3.5880 2.7709 0.0000 7 6 4.8869 3.4484 -0.0004 8 1 4.7779 4.4425 -0.4340 9 6 5.8850 2.6372 -0.8291 10 6 5.3906 3.5701 1.4147 11 1 4.8022 3.1812 2.2326 12 6 6.6030 4.1769 1.6651 13 7 7.3197 4.6501 0.6691 14 14 7.2277 4.3271 3.4191 15 1 6.2422 3.7198 4.3492 16 1 8.5270 3.6192 3.5441 17 1 7.4106 5.7612 3.7584 18 6 3.3864 1.4271 -0.0005 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 0.3454 2.6295 0.0004 23 1 6.8512 3.1415 -0.8298 24 1 5.9939 1.6431 -0.3955 25 1 5.5207 2.5492 -1.8527 26 1 8.1728 5.0767 0.8452 27 1 4.1536 0.6669 0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307503952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = 17.812729 kcal Electronic energy + Delta-G solvation = -12212.375060 eV Core-core repulsion = 9971.850555 eV Total energy + Delta-G solvation = -2240.524505 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.05520 -38.83295 -36.41231 -33.55561 -30.91791 -29.67203 -27.64064 -27.31015 -24.17501 -21.65656 -21.30312 -18.97504 -18.46449 -16.84652 -16.56544 -16.12191 -15.75302 -15.41589 -15.23346 -14.39865 -13.69117 -13.42057 -13.10552 -12.85356 -12.76930 -12.66185 -12.30085 -12.16307 -12.03201 -11.44367 -11.38329 -10.65260 -10.22690 -8.71724 -8.25217 -6.45425 1.08860 1.38756 1.41160 1.52428 1.77861 1.93392 2.37070 2.72135 3.01146 3.92768 4.12428 4.46944 4.50992 4.56577 4.63888 4.78705 4.80783 4.84056 4.98730 5.22557 5.43923 5.61520 5.71233 5.95951 6.23933 6.61541 6.67777 6.93898 7.25718 8.76587 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056849 B = 0.009174 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.411724 B = 3051.424429 C = 3205.031588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.325 6.325 3 C -0.057 4.057 4 C -0.019 4.019 5 N -0.322 5.322 6 N -0.338 5.338 7 C 0.284 3.716 8 H 0.029 0.971 9 C -0.136 4.136 10 C -0.551 4.551 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.969 3.031 15 H -0.276 1.276 16 H -0.268 1.268 17 H -0.276 1.276 18 C 0.019 3.981 19 H 0.118 0.882 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.210 0.790 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.272 0.728 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -7.183 -1.038 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C -0.112 4.112 4 C -0.203 4.203 5 N -0.147 5.147 6 N -0.124 5.124 7 C 0.185 3.815 8 H 0.047 0.953 9 C -0.195 4.195 10 C -0.589 4.589 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.545 5.545 14 Si 0.793 3.207 15 H -0.201 1.201 16 H -0.193 1.193 17 H -0.201 1.201 18 C -0.128 4.128 19 H 0.137 0.863 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.227 0.773 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.663 -5.981 -1.091 9.781 hybrid contribution 0.050 -0.391 0.782 0.875 sum -7.613 -6.371 -0.309 9.932 Atomic orbital electron populations 1.23183 0.76915 1.04997 1.01622 1.85919 1.22664 1.23517 1.91791 1.18629 0.91253 0.85893 1.15397 1.24324 1.00677 0.89644 1.05658 1.77148 0.89451 1.23984 1.24142 1.49282 1.05958 1.03760 1.53393 1.19016 0.74146 0.91569 0.96788 0.95292 1.21963 1.01404 0.99701 0.96406 1.21443 1.05143 1.40521 0.91817 0.93512 1.25596 0.95974 0.93879 1.01769 1.69936 1.13889 1.38272 1.32420 0.85343 0.78249 0.78082 0.78980 1.20121 1.19347 1.20139 1.21808 0.96319 0.87485 1.07226 0.86345 0.92714 0.92365 0.77307 0.89280 0.93036 0.94390 0.91834 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.15 113.37 1.15 1.72 15 2 O -0.33 -10.42 10.59 -96.17 -1.02 -11.44 15 3 C -0.06 -2.15 6.96 22.11 0.15 -2.00 15 4 C -0.02 -0.71 11.07 85.29 0.94 0.23 15 5 N -0.32 -14.84 12.57 -56.84 -0.71 -15.56 15 6 N -0.34 -16.15 3.54 -330.07 -1.17 -17.32 15 7 C 0.28 14.73 3.31 44.25 0.15 14.88 15 8 H 0.03 1.67 8.14 -2.39 -0.02 1.65 15 9 C -0.14 -6.26 8.62 71.98 0.62 -5.64 15 10 C -0.55 -30.52 8.84 25.60 0.23 -30.29 15 11 H 0.05 2.70 7.81 -2.91 -0.02 2.67 15 12 C 0.03 1.56 5.30 84.65 0.45 2.01 15 13 N -0.91 -49.30 11.32 21.44 0.24 -49.05 15 14 Si 0.97 42.63 29.54 68.60 2.03 44.66 15 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 18 C 0.02 0.78 10.65 83.45 0.89 1.67 15 19 H 0.12 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.05 1.04 8.10 -2.39 -0.02 1.02 15 21 H 0.06 1.06 8.10 -2.38 -0.02 1.04 15 22 H 0.21 5.70 7.69 -2.91 -0.02 5.68 15 23 H 0.09 4.43 6.07 -2.39 -0.01 4.41 15 24 H 0.05 2.21 7.17 -2.39 -0.02 2.19 15 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.18 6.89 7.29 -2.91 -0.02 6.87 15 Total: -1.00 -62.60 238.74 5.10 -57.50 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.16 Total: 8.63 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.58 Total: -17.42 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.64 Total: -81.93 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.02 Total: -11.44 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.60 5.10 -57.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.309 kcal (2) G-P(sol) polarization free energy of solvation -62.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds