Wall clock time and date at job start Mon Mar 30 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36236 * 116.99652 * 2 1 4 4 C 1.40116 * 126.05336 * 359.97169 * 3 2 1 5 5 N 1.30864 * 108.35721 * 180.02562 * 4 3 2 6 6 N 1.40089 * 108.32457 * 0.02562 * 5 4 3 7 7 C 1.46497 * 126.07913 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47049 * 25.01199 * 7 6 5 9 9 C 1.52997 * 109.47188 * 145.02090 * 7 6 5 10 10 C 1.50706 * 109.46582 * 265.01941 * 7 6 5 11 11 H 1.07999 * 120.00196 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47363 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 C 1.35583 * 126.04918 * 180.28311 * 3 2 1 19 19 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47416 * 300.00465 * 1 2 3 21 21 H 1.09010 * 109.47248 * 60.00497 * 1 2 3 22 22 H 1.08001 * 125.81756 * 0.03465 * 4 3 2 23 23 H 1.09002 * 109.47153 * 299.99573 * 9 7 6 24 24 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 25 25 H 1.09004 * 109.47261 * 59.99745 * 9 7 6 26 26 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 27 27 H 1.08005 * 126.21320 * 0.03679 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0474 1.2139 0.0000 4 6 1.4123 2.4629 -0.0006 5 7 2.3327 3.3932 -0.0009 6 7 3.5879 2.7710 -0.0012 7 6 4.8867 3.4487 -0.0011 8 1 4.7780 4.4422 0.4337 9 6 5.8856 2.6365 0.8255 10 6 5.3889 3.5720 -1.4167 11 1 4.7997 3.1840 -2.2344 12 6 6.6006 4.1802 -1.6676 13 7 7.3182 4.6522 -0.6717 14 14 7.2227 4.3337 -3.4222 15 1 6.2364 3.7272 -4.3521 16 1 7.4043 5.7685 -3.7593 17 1 8.5226 3.6269 -3.5501 18 6 3.3863 1.4272 -0.0054 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 0.3452 2.6294 -0.0005 23 1 5.5223 2.5472 1.8493 24 1 6.8521 3.1405 0.8252 25 1 5.9942 1.6429 0.3906 26 1 8.1708 5.0797 -0.8483 27 1 4.1535 0.6671 -0.0111 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307503954.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:14 Heat of formation + Delta-G solvation = 37.041342 kcal Electronic energy + Delta-G solvation = -12211.519071 eV Core-core repulsion = 9971.828382 eV Total energy + Delta-G solvation = -2239.690690 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.44843 -37.45908 -34.51635 -31.63707 -29.35110 -27.99343 -26.39560 -25.38673 -22.40841 -20.13019 -19.54892 -17.36202 -16.54139 -15.25811 -15.01046 -14.69247 -14.27415 -13.72230 -13.54490 -12.68571 -12.03374 -11.79675 -11.51368 -11.16987 -11.05727 -10.90678 -10.71866 -10.43042 -10.28718 -9.84434 -9.48515 -8.63642 -8.47533 -7.13428 -6.25440 -4.35285 2.74459 3.19588 3.27615 3.31858 3.43395 3.46758 4.04184 4.29200 5.05774 5.34030 5.44222 5.45847 5.66562 5.77676 6.17345 6.33217 6.50863 6.65159 6.68885 6.89551 7.28469 7.49683 7.69024 7.92732 7.96488 8.10226 8.56116 8.71865 9.32029 10.79038 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056866 B = 0.009173 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.269588 B = 3051.578730 C = 3205.109041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.313 6.313 3 C -0.068 4.068 4 C -0.034 4.034 5 N -0.279 5.279 6 N -0.314 5.314 7 C 0.279 3.721 8 H 0.063 0.937 9 C -0.151 4.151 10 C -0.530 4.530 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.908 3.092 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.037 3.963 19 H 0.088 0.912 20 H 0.044 0.956 21 H 0.045 0.955 22 H 0.170 0.830 23 H 0.022 0.978 24 H 0.107 0.893 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -6.132 1.459 9.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C -0.122 4.122 4 C -0.217 4.217 5 N -0.105 5.105 6 N -0.100 5.100 7 C 0.181 3.819 8 H 0.081 0.919 9 C -0.209 4.209 10 C -0.569 4.569 11 H 0.083 0.917 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.735 3.265 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.111 4.111 19 H 0.106 0.894 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.187 0.813 23 H 0.041 0.959 24 H 0.125 0.875 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.713 -4.913 1.503 8.454 hybrid contribution -0.077 -0.646 -0.947 1.149 sum -6.790 -5.559 0.556 8.793 Atomic orbital electron populations 1.22780 0.79854 1.02492 1.00520 1.85912 1.19711 1.24960 1.92066 1.18595 0.91619 0.84878 1.17125 1.23675 0.99374 0.90356 1.08340 1.77204 0.88958 1.22171 1.22201 1.49545 1.06351 1.02966 1.51108 1.19323 0.72628 0.92395 0.97584 0.91878 1.22165 1.03027 0.99929 0.95825 1.21347 1.04694 1.39562 0.91283 0.91694 1.24881 0.96040 0.94497 0.98121 1.69853 1.13618 1.38350 1.30831 0.86275 0.78672 0.77991 0.83592 1.19613 1.20663 1.20650 1.21451 0.94805 0.88142 1.06737 0.89355 0.93725 0.93678 0.81321 0.95924 0.87518 0.94064 0.92311 0.81227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.15 101.05 1.03 1.51 15 2 O -0.31 -5.44 10.59 -20.49 -0.22 -5.66 15 3 C -0.07 -1.34 6.96 -39.83 -0.28 -1.62 15 4 C -0.03 -0.66 11.07 -17.26 -0.19 -0.85 15 5 N -0.28 -6.46 12.57 30.68 0.39 -6.07 15 6 N -0.31 -7.43 3.53 -55.68 -0.20 -7.63 15 7 C 0.28 7.05 3.31 -69.08 -0.23 6.82 15 8 H 0.06 1.73 8.14 -51.93 -0.42 1.31 15 9 C -0.15 -3.44 8.62 37.16 0.32 -3.12 15 10 C -0.53 -14.40 8.84 -34.44 -0.30 -14.71 15 11 H 0.06 1.83 7.81 -52.49 -0.41 1.42 15 12 C 0.07 1.80 5.30 -17.82 -0.09 1.70 15 13 N -0.89 -23.98 11.32 55.43 0.63 -23.35 15 14 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 18 C 0.04 0.79 10.65 -16.71 -0.18 0.61 15 19 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.04 0.49 8.10 -51.93 -0.42 0.07 15 21 H 0.04 0.51 8.10 -51.92 -0.42 0.09 15 22 H 0.17 2.60 7.69 -52.49 -0.40 2.19 15 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 24 H 0.11 2.62 6.07 -51.93 -0.32 2.30 15 25 H 0.04 0.88 7.18 -51.93 -0.37 0.51 15 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 27 H 0.17 3.25 7.29 -52.48 -0.38 2.87 15 LS Contribution 238.75 15.07 3.60 3.60 Total: -1.00 -29.19 238.75 -3.88 -33.07 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -3.13 Total: -0.10 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.82 Total: -37.06 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.22 Total: -5.66 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.19 -3.88 -33.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503954.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.112 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds