Wall clock time and date at job start Mon Mar 30 2020 02:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36236 * 116.99652 * 2 1 4 4 C 1.40116 * 126.05336 * 359.97169 * 3 2 1 5 5 N 1.30864 * 108.35721 * 180.02562 * 4 3 2 6 6 N 1.40089 * 108.32457 * 0.02562 * 5 4 3 7 7 C 1.46497 * 126.07913 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47049 * 25.01199 * 7 6 5 9 9 C 1.52997 * 109.47188 * 145.02090 * 7 6 5 10 10 C 1.50706 * 109.46582 * 265.01941 * 7 6 5 11 11 H 1.07999 * 120.00196 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47363 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47233 * 120.00158 * 14 12 10 17 17 H 1.48508 * 109.46883 * 239.99963 * 14 12 10 18 18 C 1.35583 * 126.04918 * 180.28311 * 3 2 1 19 19 H 1.09004 * 109.47347 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47416 * 300.00465 * 1 2 3 21 21 H 1.09010 * 109.47248 * 60.00497 * 1 2 3 22 22 H 1.08001 * 125.81756 * 0.03465 * 4 3 2 23 23 H 1.09002 * 109.47153 * 299.99573 * 9 7 6 24 24 H 1.09001 * 109.46832 * 179.97438 * 9 7 6 25 25 H 1.09004 * 109.47261 * 59.99745 * 9 7 6 26 26 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 27 27 H 1.08005 * 126.21320 * 0.03679 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0474 1.2139 0.0000 4 6 1.4123 2.4629 -0.0006 5 7 2.3327 3.3932 -0.0009 6 7 3.5879 2.7710 -0.0012 7 6 4.8867 3.4487 -0.0011 8 1 4.7780 4.4422 0.4337 9 6 5.8856 2.6365 0.8255 10 6 5.3889 3.5720 -1.4167 11 1 4.7997 3.1840 -2.2344 12 6 6.6006 4.1802 -1.6676 13 7 7.3182 4.6522 -0.6717 14 14 7.2227 4.3337 -3.4222 15 1 6.2364 3.7272 -4.3521 16 1 7.4043 5.7685 -3.7593 17 1 8.5226 3.6269 -3.5501 18 6 3.3863 1.4272 -0.0054 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 0.3452 2.6294 -0.0005 23 1 5.5223 2.5472 1.8493 24 1 6.8521 3.1405 0.8252 25 1 5.9942 1.6429 0.3906 26 1 8.1708 5.0797 -0.8483 27 1 4.1535 0.6671 -0.0111 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307503954.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:14 Heat of formation + Delta-G solvation = 17.815015 kcal Electronic energy + Delta-G solvation = -12212.352788 eV Core-core repulsion = 9971.828382 eV Total energy + Delta-G solvation = -2240.524406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.05474 -38.83245 -36.41211 -33.55589 -30.91813 -29.67183 -27.63945 -27.30958 -24.17437 -21.65605 -21.30309 -18.97466 -18.46482 -16.84622 -16.56595 -16.12100 -15.75276 -15.41285 -15.23511 -14.39898 -13.69092 -13.41986 -13.10504 -12.85373 -12.76987 -12.66180 -12.30092 -12.16316 -12.03110 -11.44413 -11.38262 -10.65258 -10.22690 -8.71721 -8.25226 -6.45409 1.08844 1.38734 1.41151 1.52446 1.77907 1.93398 2.37058 2.72166 3.01146 3.92771 4.12401 4.46943 4.51018 4.56575 4.63897 4.78751 4.80800 4.84052 4.98739 5.22539 5.43925 5.61535 5.71238 5.95941 6.23937 6.61560 6.67800 6.93885 7.25707 8.76566 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056866 B = 0.009173 C = 0.008734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.269588 B = 3051.578730 C = 3205.109041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.325 6.325 3 C -0.057 4.057 4 C -0.019 4.019 5 N -0.322 5.322 6 N -0.338 5.338 7 C 0.284 3.716 8 H 0.029 0.971 9 C -0.136 4.136 10 C -0.551 4.551 11 H 0.047 0.953 12 C 0.029 3.971 13 N -0.907 5.907 14 Si 0.969 3.031 15 H -0.276 1.276 16 H -0.276 1.276 17 H -0.268 1.268 18 C 0.019 3.981 19 H 0.118 0.882 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.210 0.790 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.272 0.728 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -7.183 1.030 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.239 6.239 3 C -0.112 4.112 4 C -0.203 4.203 5 N -0.147 5.147 6 N -0.124 5.124 7 C 0.185 3.815 8 H 0.047 0.953 9 C -0.195 4.195 10 C -0.589 4.589 11 H 0.065 0.935 12 C -0.172 4.172 13 N -0.545 5.545 14 Si 0.793 3.207 15 H -0.201 1.201 16 H -0.201 1.201 17 H -0.193 1.193 18 C -0.128 4.128 19 H 0.137 0.863 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.227 0.773 23 H 0.056 0.944 24 H 0.107 0.893 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.662 -5.981 1.087 9.781 hybrid contribution 0.049 -0.389 -0.784 0.876 sum -7.614 -6.369 0.303 9.931 Atomic orbital electron populations 1.23183 0.76919 1.04997 1.01621 1.85920 1.22662 1.23514 1.91794 1.18630 0.91251 0.85892 1.15410 1.24323 1.00679 0.89645 1.05647 1.77147 0.89451 1.23986 1.24140 1.49285 1.05956 1.03759 1.53401 1.19015 0.74150 0.91567 0.96790 0.95287 1.21963 1.01395 0.99697 0.96416 1.21447 1.05179 1.40507 0.91800 0.93508 1.25599 0.95968 0.93882 1.01774 1.69937 1.13887 1.38265 1.32422 0.85345 0.78249 0.78081 0.78984 1.20117 1.20141 1.19348 1.21807 0.96323 0.87486 1.07209 0.86346 0.92365 0.92717 0.77305 0.94387 0.89280 0.93040 0.91836 0.79970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.15 113.37 1.15 1.72 15 2 O -0.33 -10.42 10.59 -96.24 -1.02 -11.44 15 3 C -0.06 -2.16 6.96 22.11 0.15 -2.00 15 4 C -0.02 -0.71 11.07 85.29 0.94 0.24 15 5 N -0.32 -14.84 12.57 -56.85 -0.71 -15.56 15 6 N -0.34 -16.16 3.53 -330.08 -1.17 -17.32 15 7 C 0.28 14.73 3.31 44.25 0.15 14.88 15 8 H 0.03 1.67 8.14 -2.39 -0.02 1.65 15 9 C -0.14 -6.26 8.62 71.98 0.62 -5.64 15 10 C -0.55 -30.52 8.84 25.60 0.23 -30.29 15 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 15 12 C 0.03 1.56 5.30 84.66 0.45 2.01 15 13 N -0.91 -49.29 11.32 21.45 0.24 -49.05 15 14 Si 0.97 42.63 29.54 68.60 2.03 44.66 15 15 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 16 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 18 C 0.02 0.78 10.65 83.45 0.89 1.67 15 19 H 0.12 1.74 8.14 -2.38 -0.02 1.72 15 20 H 0.06 1.06 8.10 -2.39 -0.02 1.04 15 21 H 0.05 1.04 8.10 -2.38 -0.02 1.02 15 22 H 0.21 5.70 7.69 -2.91 -0.02 5.68 15 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.09 4.43 6.07 -2.39 -0.01 4.41 15 25 H 0.05 2.20 7.18 -2.38 -0.02 2.19 15 26 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 27 H 0.18 6.89 7.29 -2.91 -0.02 6.87 15 Total: -1.00 -62.59 238.75 5.10 -57.49 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.16 Total: 8.64 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 4.58 Total: -17.42 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -1.64 Total: -81.93 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.02 Total: -11.44 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -62.59 5.10 -57.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307503954.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.305 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds