Wall clock time and date at job start Mon Mar 30 2020 02:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47434 * 299.99946 * 3 2 1 6 6 H 1.48498 * 109.46893 * 60.00268 * 3 2 1 7 7 C 1.37882 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99691 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46726 * 180.02562 * 9 7 2 11 11 C 1.34949 * 126.03292 * 124.99938 * 10 9 7 12 12 C 1.35318 * 107.74247 * 179.97438 * 11 10 9 13 13 C 1.50699 * 126.04085 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47290 * 270.00172 * 13 12 11 15 15 O 1.42897 * 109.47203 * 179.97438 * 14 13 12 16 16 C 1.39875 * 107.92186 * 0.02562 * 12 11 10 17 17 N 1.30839 * 108.20184 * 359.97438 * 16 12 11 18 18 H 0.97001 * 119.99266 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.47368 * 60.00359 * 9 7 2 20 20 H 1.09005 * 109.47215 * 299.99968 * 9 7 2 21 21 H 1.07997 * 126.13040 * 0.03555 * 11 10 9 22 22 H 1.08999 * 109.46915 * 30.00225 * 13 12 11 23 23 H 1.09001 * 109.46996 * 150.00203 * 13 12 11 24 24 H 1.08999 * 109.47185 * 299.99888 * 14 13 12 25 25 H 1.08996 * 109.47051 * 59.99583 * 14 13 12 26 26 H 0.96697 * 113.99885 * 179.97438 * 15 14 13 27 27 H 1.08003 * 125.89835 * 179.73925 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2430 -4.6229 0.8934 12 6 3.2627 -5.4415 0.5452 13 6 3.6754 -6.6994 1.2652 14 6 4.7138 -6.3571 2.3355 15 8 5.1046 -7.5498 3.0186 16 6 3.8668 -4.9132 -0.6004 17 7 3.2322 -3.8170 -0.9286 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5570 0.8897 21 1 1.5795 -4.7549 1.7352 22 1 2.8026 -7.1509 1.7369 23 1 4.1068 -7.4015 0.5517 24 1 5.5865 -5.9056 1.8637 25 1 4.2824 -5.6550 3.0489 26 1 5.7630 -7.4079 3.7125 27 1 4.7134 -5.3350 -1.1217 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308063164.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:54 Heat of formation + Delta-G solvation = 11.156995 kcal Electronic energy + Delta-G solvation = -11775.528476 eV Core-core repulsion = 9534.715357 eV Total energy + Delta-G solvation = -2240.813119 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.40890 -36.86623 -33.85662 -32.40678 -31.10875 -28.29910 -26.43848 -23.40595 -22.40936 -20.09539 -19.42442 -17.34165 -16.53360 -15.81648 -14.98922 -14.51317 -14.37420 -13.60235 -13.35581 -12.65233 -12.41202 -12.21759 -11.67080 -11.38606 -11.18695 -10.92524 -10.85796 -10.27801 -9.92740 -9.82710 -9.57842 -8.71166 -8.51717 -7.63116 -6.27568 -4.32529 2.74884 3.20550 3.28182 3.34353 3.38099 3.61641 4.29537 4.47019 5.07810 5.19536 5.47874 5.49008 5.52585 5.70074 5.96292 6.10628 6.27883 6.33367 6.72801 6.89574 7.02916 7.39787 7.65921 7.67489 7.84600 8.00359 8.59172 8.77423 9.33410 10.81586 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056727 B = 0.007325 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.475205 B = 3821.666341 C = 3928.447778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.254 3.746 10 N -0.326 5.326 11 C 0.053 3.947 12 C -0.270 4.270 13 C -0.027 4.027 14 C 0.078 3.922 15 O -0.581 6.581 16 C 0.021 3.979 17 N -0.283 5.283 18 H 0.267 0.733 19 H 0.045 0.955 20 H 0.054 0.946 21 H 0.163 0.837 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.375 0.625 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 -9.302 4.410 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.106 5.106 11 C -0.097 4.097 12 C -0.282 4.282 13 C -0.066 4.066 14 C 0.000 4.000 15 O -0.387 6.387 16 C -0.164 4.164 17 N -0.106 5.106 18 H 0.077 0.923 19 H 0.063 0.937 20 H 0.072 0.928 21 H 0.180 0.820 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.221 0.779 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.313 -8.303 3.137 10.345 hybrid contribution 0.761 0.613 1.000 1.398 sum 6.073 -7.690 4.137 10.637 Atomic orbital electron populations 1.69933 1.06068 1.27564 1.49765 1.24959 0.95001 0.99617 0.94550 0.86258 0.80062 0.82366 0.77746 1.19524 1.20635 1.20750 1.21284 0.94017 0.89335 1.52055 0.91250 1.19743 0.85865 0.81477 0.99222 1.49449 1.23723 1.19156 1.18265 1.22302 1.00197 0.90550 0.96663 1.19646 1.03442 1.02474 1.02659 1.19540 0.97518 0.94041 0.95473 1.22327 0.97496 0.85929 0.94204 1.86442 1.63938 1.34173 1.54099 1.23593 1.00863 0.94667 0.97231 1.77388 1.01216 1.17414 1.14541 0.92348 0.93674 0.92806 0.81971 0.91513 0.91302 0.93698 0.93733 0.77889 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 13.29 55.43 0.74 -24.63 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 7 C -0.53 -14.76 9.24 -34.44 -0.32 -15.07 15 8 H 0.07 2.01 7.81 -52.48 -0.41 1.60 15 9 C 0.25 6.49 6.26 -5.19 -0.03 6.46 15 10 N -0.33 -7.50 3.67 -62.54 -0.23 -7.73 15 11 C 0.05 1.01 11.36 -17.22 -0.20 0.82 15 12 C -0.27 -4.65 5.35 -105.05 -0.56 -5.21 15 13 C -0.03 -0.38 6.07 -27.88 -0.17 -0.55 15 14 C 0.08 1.00 7.03 37.16 0.26 1.26 15 15 O -0.58 -6.99 13.66 -35.23 -0.48 -7.47 15 16 C 0.02 0.39 11.96 -17.36 -0.21 0.18 15 17 N -0.28 -6.49 12.41 30.63 0.38 -6.11 15 18 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 19 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 20 H 0.05 1.35 8.07 -51.93 -0.42 0.93 15 21 H 0.16 2.58 8.06 -52.49 -0.42 2.16 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 26 H 0.37 2.73 9.12 45.56 0.42 3.15 15 27 H 0.17 2.52 8.06 -52.48 -0.42 2.10 15 LS Contribution 246.75 15.07 3.72 3.72 Total: -1.00 -31.07 246.75 -4.73 -35.80 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -2.51 Total: 0.60 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.32 Total: -10.51 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.89 Total: -38.47 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.48 Total: -7.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.07 -4.73 -35.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308063164.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds