Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.46972 * 240.00015 * 3 2 1 5 5 H 1.48508 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99513 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34804 * 116.99538 * 180.02562 * 11 10 9 13 13 O 1.21533 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.46955 * 119.99661 * 180.27086 * 12 11 10 15 15 C 1.33155 * 135.14412 * 179.36022 * 14 12 11 16 16 C 1.50756 * 97.87057 * 179.97438 * 15 14 12 17 17 C 1.50765 * 135.14143 * 359.72571 * 14 12 11 18 18 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 20 20 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 21 21 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 22 22 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 23 23 H 1.08001 * 131.06414 * 359.97438 * 15 14 12 24 24 H 1.08998 * 114.55209 * 246.80277 * 16 15 14 25 25 H 1.09001 * 114.13865 * 113.69651 * 16 15 14 26 26 H 1.09001 * 113.16201 * 295.21494 * 17 14 12 27 27 H 1.08994 * 113.16610 * 64.71836 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2534 -6.0500 0.0027 13 8 3.4671 -5.9864 0.0041 14 6 1.5863 -7.3594 -0.0038 15 6 1.9946 -8.6268 -0.0148 16 6 0.6365 -9.2812 -0.0128 17 6 0.1536 -7.8288 -0.0075 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6240 -2.5566 0.8903 21 1 2.8712 -3.6039 0.8922 22 1 2.8725 -3.6047 -0.8878 23 1 2.9872 -9.0523 -0.0227 24 1 0.4024 -9.8361 0.8957 25 1 0.4039 -9.8283 -0.9264 26 1 -0.3879 -7.5606 0.8996 27 1 -0.3860 -7.5517 -0.9131 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308068462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = -47.941952 kcal Electronic energy + Delta-G solvation = -11597.343694 eV Core-core repulsion = 9321.675101 eV Total energy + Delta-G solvation = -2275.668593 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.06547 -38.55472 -35.94882 -33.32497 -30.33327 -27.40917 -25.43199 -24.68454 -22.09311 -20.77654 -18.33148 -16.95843 -16.31678 -16.03687 -15.94457 -15.20804 -14.54319 -13.39865 -13.23313 -13.20103 -12.33907 -12.08844 -11.69159 -11.22843 -11.05845 -10.85255 -10.73035 -10.63981 -10.20804 -9.64478 -9.62211 -9.30611 -9.28938 -8.43266 -6.09495 -4.13981 1.12894 3.19898 3.22891 3.30893 3.34749 3.39227 4.17693 4.39933 4.58987 4.87861 5.03546 5.26919 5.32132 5.43153 5.71809 5.88898 5.95612 6.10505 6.11488 6.48341 6.64678 6.96171 7.56607 7.63475 7.87640 8.20037 8.27738 8.91318 9.50266 11.02029 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.087557 B = 0.006199 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.713624 B = 4515.431278 C = 4803.631911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.349 6.349 12 C 0.524 3.476 13 O -0.515 6.515 14 C -0.188 4.188 15 C -0.079 4.079 16 C -0.120 4.120 17 C -0.092 4.092 18 H 0.264 0.736 19 H 0.029 0.971 20 H 0.029 0.971 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.136 0.864 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 -15.185 -0.026 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.265 6.265 12 C 0.369 3.631 13 O -0.406 6.406 14 C -0.189 4.189 15 C -0.098 4.098 16 C -0.157 4.157 17 C -0.129 4.129 18 H 0.074 0.926 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.154 0.846 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.154 -14.974 -0.027 14.975 hybrid contribution 0.706 1.051 0.000 1.266 sum 0.859 -13.923 -0.026 13.949 Atomic orbital electron populations 1.69964 1.06094 1.27098 1.49704 1.24981 0.94924 0.99377 0.94851 0.86522 0.79475 0.82442 0.78793 1.20059 1.21117 1.20053 1.20950 0.93171 0.90126 1.52319 0.92275 1.19166 0.94180 0.88946 0.98926 1.23685 0.96458 0.78620 1.01037 1.86625 1.41794 1.15512 1.82522 1.20114 0.85099 0.84777 0.73094 1.90822 1.14997 1.88400 1.46419 1.22119 0.98600 0.91206 1.06971 1.25289 0.99123 0.93070 0.92280 1.22046 0.93196 0.96871 1.03564 1.21901 0.93636 0.93412 1.03972 0.92647 0.95300 0.95307 0.92206 0.92219 0.84644 0.88056 0.88136 0.89392 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 15 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 15 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 9 C 0.02 0.67 5.35 -27.89 -0.15 0.52 15 10 C 0.07 1.73 5.42 37.15 0.20 1.93 15 11 O -0.35 -7.44 10.23 -40.78 -0.42 -7.86 15 12 C 0.52 10.12 7.94 34.26 0.27 10.39 15 13 O -0.52 -11.10 16.90 -19.29 -0.33 -11.42 15 14 C -0.19 -2.76 7.32 -102.83 -0.75 -3.51 15 15 C -0.08 -0.89 11.87 -47.10 -0.56 -1.45 15 16 C -0.12 -0.98 8.56 -27.83 -0.24 -1.22 15 17 C -0.09 -1.03 7.98 -38.87 -0.31 -1.34 15 18 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.06 1.36 8.14 -51.93 -0.42 0.94 15 23 H 0.14 1.34 8.06 -52.49 -0.42 0.92 15 24 H 0.10 0.65 8.14 -51.93 -0.42 0.22 15 25 H 0.10 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 LS Contribution 249.52 15.07 3.76 3.76 Total: -1.00 -31.83 249.52 -6.56 -38.39 By element: Atomic # 1 Polarization: -1.82 SS G_CDS: -3.35 Total: -5.16 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.95 Total: -8.41 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.74 Total: -19.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.83 -6.56 -38.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308068462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.550 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds