Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48502 * 109.46972 * 240.00015 * 3 2 1 5 5 H 1.48508 * 109.46903 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47336 * 119.99513 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34804 * 116.99538 * 180.02562 * 11 10 9 13 13 O 1.21533 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.46955 * 119.99661 * 180.27086 * 12 11 10 15 15 C 1.33155 * 135.14412 * 179.36022 * 14 12 11 16 16 C 1.50756 * 97.87057 * 179.97438 * 15 14 12 17 17 C 1.50765 * 135.14143 * 359.72571 * 14 12 11 18 18 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 19 19 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 20 20 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 21 21 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 22 22 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 23 23 H 1.08001 * 131.06414 * 359.97438 * 15 14 12 24 24 H 1.08998 * 114.55209 * 246.80277 * 16 15 14 25 25 H 1.09001 * 114.13865 * 113.69651 * 16 15 14 26 26 H 1.09001 * 113.16201 * 295.21494 * 17 14 12 27 27 H 1.08994 * 113.16610 * 64.71836 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2534 -6.0500 0.0027 13 8 3.4671 -5.9864 0.0041 14 6 1.5863 -7.3594 -0.0038 15 6 1.9946 -8.6268 -0.0148 16 6 0.6365 -9.2812 -0.0128 17 6 0.1536 -7.8288 -0.0075 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6240 -2.5566 0.8903 21 1 2.8712 -3.6039 0.8922 22 1 2.8725 -3.6047 -0.8878 23 1 2.9872 -9.0523 -0.0227 24 1 0.4024 -9.8361 0.8957 25 1 0.4039 -9.8283 -0.9264 26 1 -0.3879 -7.5606 0.8996 27 1 -0.3860 -7.5517 -0.9131 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308068462.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = -67.111641 kcal Electronic energy + Delta-G solvation = -11598.174954 eV Core-core repulsion = 9321.675101 eV Total energy + Delta-G solvation = -2276.499853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.48574 -39.64573 -37.61549 -35.47100 -32.40523 -28.61802 -26.95852 -25.98606 -23.56342 -22.63694 -19.74691 -18.61131 -17.99066 -17.60577 -17.39215 -16.54228 -16.12797 -15.01074 -14.90879 -14.45754 -14.15565 -13.37640 -13.19657 -12.97645 -12.61033 -12.59455 -12.35715 -11.94859 -11.62424 -11.54129 -11.53809 -11.33971 -10.63309 -10.28201 -8.28930 -6.42969 -0.01082 1.39668 1.43999 1.51661 1.73786 1.87869 2.39217 3.05140 3.31783 3.65135 3.84369 4.16139 4.17914 4.34664 4.38001 4.58571 4.64328 4.98537 5.03538 5.21736 5.26441 5.41790 5.45347 5.56336 5.70129 6.03335 6.65638 6.70915 7.26873 8.83694 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.087557 B = 0.006199 C = 0.005828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.713624 B = 4515.431278 C = 4803.631911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.554 4.554 8 H 0.065 0.935 9 C 0.032 3.968 10 C 0.089 3.911 11 O -0.360 6.360 12 C 0.520 3.480 13 O -0.549 6.549 14 C -0.259 4.259 15 C -0.032 4.032 16 C -0.095 4.095 17 C -0.095 4.095 18 H 0.269 0.731 19 H 0.007 0.993 20 H 0.007 0.993 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.150 0.850 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -16.637 -0.036 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.592 4.592 8 H 0.084 0.916 9 C -0.005 4.005 10 C 0.016 3.984 11 O -0.276 6.276 12 C 0.369 3.631 13 O -0.442 6.442 14 C -0.260 4.260 15 C -0.051 4.051 16 C -0.130 4.130 17 C -0.132 4.132 18 H 0.078 0.922 19 H 0.025 0.975 20 H 0.025 0.975 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.168 0.832 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.105 0.895 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.494 -16.453 -0.036 16.460 hybrid contribution 0.582 1.333 0.002 1.454 sum 1.076 -15.120 -0.034 15.159 Atomic orbital electron populations 1.70090 1.07855 1.28447 1.50144 1.25990 0.95882 1.03482 0.93914 0.85342 0.78178 0.77224 0.79351 1.19011 1.20303 1.19003 1.21346 0.93736 0.91191 1.52912 0.91649 1.18973 0.94284 0.90523 0.96716 1.23220 0.95218 0.78945 1.01024 1.86608 1.42113 1.15703 1.83211 1.20961 0.85008 0.85448 0.71715 1.90781 1.16268 1.88744 1.48441 1.22226 1.01256 0.89827 1.12686 1.25888 1.01455 0.91871 0.85845 1.22210 0.89404 0.95118 1.06316 1.22006 0.91646 0.95541 1.03975 0.92229 0.97487 0.97496 0.92160 0.92171 0.83232 0.84966 0.85061 0.89502 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.01 15 2 C 0.01 0.37 5.46 84.65 0.46 0.83 15 3 Si 0.98 44.19 29.54 68.60 2.03 46.22 15 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.55 -32.29 9.11 25.60 0.23 -32.06 15 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 15 9 C 0.03 1.80 5.35 29.85 0.16 1.96 15 10 C 0.09 4.29 5.42 71.98 0.39 4.68 15 11 O -0.36 -16.03 10.23 -57.16 -0.58 -16.61 15 12 C 0.52 20.64 7.94 70.11 0.56 21.19 15 13 O -0.55 -24.24 16.90 19.73 0.33 -23.91 15 14 C -0.26 -7.40 7.32 -18.70 -0.14 -7.53 15 15 C -0.03 -0.62 11.87 17.40 0.21 -0.42 15 16 C -0.09 -1.10 8.56 29.88 0.26 -0.84 15 17 C -0.09 -1.93 7.98 22.73 0.18 -1.75 15 18 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 19 H 0.01 0.40 8.14 -2.39 -0.02 0.38 15 20 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 21 H 0.06 2.86 8.14 -2.39 -0.02 2.84 15 22 H 0.06 2.85 8.14 -2.38 -0.02 2.83 15 23 H 0.15 2.43 8.06 -2.91 -0.02 2.41 15 24 H 0.13 0.91 8.14 -2.39 -0.02 0.89 15 25 H 0.13 0.91 8.14 -2.39 -0.02 0.89 15 26 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -70.77 249.52 5.52 -65.25 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: 1.15 Total: -1.01 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 2.31 Total: -13.93 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.25 Total: -40.52 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.77 5.52 -65.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308068462.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.861 kcal (2) G-P(sol) polarization free energy of solvation -70.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds