Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00430 * 2 1 4 4 H 1.48494 * 109.46966 * 239.99992 * 3 2 1 5 5 H 1.48500 * 109.47040 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47496 * 119.99436 * 3 2 1 7 7 C 1.37879 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99797 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00485 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47545 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47431 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00369 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47272 * 180.02562 * 12 11 10 14 14 C 1.34326 * 126.16708 * 94.98392 * 13 12 11 15 15 O 1.34752 * 107.11592 * 179.80873 * 14 13 12 16 16 C 1.33971 * 107.75443 * 0.36395 * 15 14 13 17 17 N 1.30258 * 108.75619 * 359.62763 * 16 15 14 18 18 H 0.97002 * 119.99905 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.47302 * 59.99292 * 9 7 2 20 20 H 1.09008 * 109.46700 * 300.00190 * 9 7 2 21 21 H 1.09001 * 109.47409 * 59.99344 * 10 9 7 22 22 H 1.09008 * 109.47267 * 299.99831 * 10 9 7 23 23 H 1.00905 * 110.99789 * 303.95305 * 11 10 9 24 24 H 1.08999 * 109.47114 * 59.99533 * 12 11 10 25 25 H 1.09000 * 109.46848 * 300.00320 * 12 11 10 26 26 H 1.07999 * 126.44771 * 0.05402 * 14 13 12 27 27 H 1.08002 * 125.62404 * 179.90033 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0018 11 7 1.5105 -4.9343 0.0024 12 6 2.4349 -6.0760 0.0031 13 6 1.6468 -7.3604 0.0031 14 6 1.3130 -8.0856 -1.0772 15 8 0.6178 -9.1534 -0.6387 16 6 0.5292 -9.0635 0.6951 17 7 1.1504 -7.9869 1.0845 18 1 -0.4850 0.8401 -0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8904 21 1 2.8711 -3.6040 0.8922 22 1 2.8724 -3.6049 -0.8878 23 1 0.8738 -4.9838 0.7836 24 1 3.0629 -6.0345 0.8930 25 1 3.0630 -6.0354 -0.8869 26 1 1.5592 -7.8581 -2.1039 27 1 0.0293 -9.7699 1.3413 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308078200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = -12.005283 kcal Electronic energy + Delta-G solvation = -11550.715690 eV Core-core repulsion = 9308.898179 eV Total energy + Delta-G solvation = -2241.817511 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.20010 -37.81765 -35.82643 -34.82767 -32.32094 -30.47572 -27.24116 -25.11374 -23.61937 -22.49587 -21.99464 -18.57017 -18.38956 -17.45368 -16.84935 -16.47162 -15.86071 -15.48864 -15.41252 -14.74387 -14.17489 -13.61670 -13.41154 -12.84550 -12.79081 -12.47543 -12.20963 -11.96381 -11.54508 -11.41453 -11.29938 -10.56326 -9.87559 -9.35375 -8.20227 -6.32323 0.61777 1.40964 1.44699 1.52546 1.70330 2.07121 2.41264 3.13102 3.26157 3.56854 3.85229 4.14435 4.48642 4.53542 4.60828 4.70542 4.87991 5.00378 5.05382 5.38983 5.43543 5.64982 5.76493 6.09285 6.21719 6.39589 6.81217 6.84774 7.37080 8.91978 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.102370 B = 0.005526 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 273.452482 B = 5065.558867 C = 5149.917923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.692 5.692 12 C 0.141 3.859 13 C -0.041 4.041 14 C -0.047 4.047 15 O -0.211 6.211 16 C 0.179 3.821 17 N -0.528 5.528 18 H 0.264 0.736 19 H -0.004 1.004 20 H -0.013 1.013 21 H 0.020 0.980 22 H 0.070 0.930 23 H 0.335 0.665 24 H 0.037 0.963 25 H 0.104 0.896 26 H 0.243 0.757 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.463 -16.615 -1.117 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.322 5.322 12 C 0.012 3.988 13 C -0.159 4.159 14 C -0.118 4.118 15 O -0.097 6.097 16 C -0.048 4.048 17 N -0.258 5.258 18 H 0.073 0.927 19 H 0.014 0.986 20 H 0.005 0.995 21 H 0.038 0.962 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.055 0.945 25 H 0.122 0.878 26 H 0.259 0.741 27 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 3.294 -16.349 -1.203 16.721 hybrid contribution 0.276 0.817 0.430 0.964 sum 3.569 -15.532 -0.773 15.956 Atomic orbital electron populations 1.70113 1.07934 1.27918 1.51343 1.26023 0.95788 1.03540 0.94562 0.85432 0.78191 0.77726 0.79276 1.18912 1.20871 1.19141 1.21599 0.93670 0.92111 1.51075 0.91811 1.18924 0.94350 0.92416 0.94971 1.21830 0.95639 0.87759 0.99300 1.60604 1.20002 1.01689 1.49953 1.20159 0.92278 0.84325 1.02035 1.21732 1.05186 0.99781 0.89250 1.25297 0.97940 0.86819 1.01784 1.84510 1.57804 1.41852 1.25536 1.29051 0.98750 0.97159 0.79805 1.70295 1.14176 1.08366 1.32925 0.92722 0.98575 0.99508 0.96222 0.91204 0.84853 0.94507 0.87831 0.74052 0.69236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.68 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 15 3 Si 0.97 44.62 29.54 68.60 2.03 46.64 15 4 H -0.26 -11.58 7.11 99.48 0.71 -10.88 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 7 C -0.55 -31.65 9.11 25.60 0.23 -31.42 15 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 15 9 C 0.03 1.69 5.23 29.84 0.16 1.85 15 10 C 0.08 3.58 5.62 86.30 0.49 4.07 15 11 N -0.69 -26.07 6.49 -517.95 -3.36 -29.43 15 12 C 0.14 4.24 6.23 85.56 0.53 4.77 15 13 C -0.04 -1.16 6.62 41.26 0.27 -0.88 15 14 C -0.05 -1.05 12.08 66.93 0.81 -0.24 15 15 O -0.21 -4.42 10.78 -3.76 -0.04 -4.46 15 16 C 0.18 3.47 13.23 130.48 1.73 5.19 15 17 N -0.53 -14.80 11.29 -304.07 -3.43 -18.23 15 18 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 19 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 15 20 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 15 21 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 22 H 0.07 2.86 8.14 -2.38 -0.02 2.84 15 23 H 0.33 13.27 8.72 -89.69 -0.78 12.49 15 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 25 H 0.10 2.65 8.14 -2.39 -0.02 2.63 15 26 H 0.24 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.29 2.19 8.06 -2.91 -0.02 2.17 15 Total: -1.00 -71.22 246.03 0.53 -70.68 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.38 Total: 8.75 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.68 Total: -16.27 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.51 Total: -105.35 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.04 Total: -4.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -71.22 0.53 -70.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308078200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.677 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds