Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48499 * 109.47291 * 240.00308 * 3 2 1 5 5 H 1.48496 * 109.47257 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46771 * 120.00432 * 3 2 1 7 7 C 1.37869 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00451 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99977 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.42895 * 113.99773 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47074 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.47035 * 179.97438 * 12 11 10 14 14 C 1.34944 * 126.03372 * 125.00124 * 13 12 11 15 15 C 1.35317 * 107.74658 * 179.97438 * 14 13 12 16 16 C 1.39871 * 107.91935 * 0.02562 * 15 14 13 17 17 N 1.30845 * 108.20108 * 359.74200 * 16 15 14 18 18 H 0.97001 * 120.00525 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.46989 * 60.00038 * 9 7 2 20 20 H 1.08997 * 109.46834 * 300.00326 * 9 7 2 21 21 H 1.09004 * 109.47055 * 60.00292 * 11 10 9 22 22 H 1.09004 * 109.47689 * 300.00228 * 11 10 9 23 23 H 1.09004 * 109.46930 * 60.00229 * 12 11 10 24 24 H 1.09000 * 109.47312 * 300.00173 * 12 11 10 25 25 H 1.08001 * 126.12891 * 0.02562 * 14 13 12 26 26 H 1.08002 * 126.04160 * 179.97438 * 15 14 13 27 27 H 1.07995 * 125.90070 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.5653 -4.8753 0.0000 12 6 2.6483 -5.9561 -0.0006 13 7 2.0182 -7.2788 0.0006 14 6 2.2410 -8.2650 -0.8932 15 6 1.4694 -9.3203 -0.5438 16 6 0.7500 -8.9666 0.6024 17 7 1.0821 -7.7448 0.9326 18 1 -0.4851 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 0.9448 -4.9826 -0.8898 22 1 0.9453 -4.9822 0.8902 23 1 3.2690 -5.8489 0.8889 24 1 3.2678 -5.8491 -0.8911 25 1 2.9151 -8.2204 -1.7358 26 1 1.4175 -10.2678 -1.0593 27 1 0.0452 -9.5948 1.1267 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395408458.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = 26.527366 kcal Electronic energy + Delta-G solvation = -11595.444044 eV Core-core repulsion = 9355.297435 eV Total energy + Delta-G solvation = -2240.146610 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.03278 -36.97445 -33.63166 -32.60889 -30.14124 -28.63904 -26.77974 -23.15209 -22.31443 -21.01048 -20.40206 -17.19829 -16.48802 -15.66973 -15.28116 -14.77906 -14.29039 -14.15155 -13.40184 -13.21674 -12.83645 -12.50387 -12.01465 -11.20714 -10.92970 -10.89044 -10.79457 -10.48681 -10.14709 -9.36508 -9.20273 -8.92864 -8.55506 -8.27284 -6.15226 -4.18231 1.96788 2.55472 2.89567 3.29615 3.32476 3.36093 4.27995 4.50918 4.85172 4.99634 5.16602 5.21020 5.46186 5.52470 5.69148 5.77672 6.00345 6.07780 6.17343 6.69867 7.01741 7.08003 7.35197 7.72347 7.77725 8.06960 8.44246 8.93054 9.46598 10.96179 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.107701 B = 0.005698 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.917462 B = 4912.733597 C = 5052.828326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.067 0.933 9 C 0.198 3.802 10 O -0.396 6.396 11 C 0.055 3.945 12 C 0.135 3.865 13 N -0.363 5.363 14 C 0.055 3.945 15 C -0.282 4.282 16 C 0.038 3.962 17 N -0.292 5.292 18 H 0.266 0.734 19 H 0.007 0.993 20 H 0.008 0.992 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 -14.755 -1.858 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.124 3.876 10 O -0.315 6.315 11 C -0.023 4.023 12 C 0.013 3.987 13 N -0.147 5.147 14 C -0.092 4.092 15 C -0.312 4.312 16 C -0.148 4.148 17 N -0.114 5.114 18 H 0.075 0.925 19 H 0.025 0.975 20 H 0.026 0.974 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.190 0.810 26 H 0.163 0.837 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.377 -13.465 -1.032 13.920 hybrid contribution 0.123 0.132 -0.662 0.686 sum 3.500 -13.333 -1.694 13.889 Atomic orbital electron populations 1.69952 1.06146 1.27435 1.50073 1.24959 0.95004 0.99502 0.94989 0.86355 0.79287 0.81724 0.78873 1.19960 1.21092 1.19940 1.21000 0.94067 0.89212 1.51482 0.91466 1.20250 0.88627 0.83013 0.95711 1.87771 1.35844 1.12550 1.95376 1.22326 0.94054 0.85202 1.00735 1.21581 0.95009 0.77238 1.04823 1.48724 1.33118 1.12223 1.20604 1.22607 1.01326 0.89112 0.96133 1.21475 1.05722 1.01364 1.02614 1.23889 1.00341 0.93628 0.96988 1.77419 1.07506 1.12884 1.13600 0.92468 0.97517 0.97392 0.94086 0.92894 0.88928 0.87884 0.80971 0.83728 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.52 -15.32 9.43 -34.44 -0.32 -15.65 15 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 15 9 C 0.20 5.50 5.69 36.01 0.20 5.71 15 10 O -0.40 -9.54 10.33 -35.23 -0.36 -9.90 15 11 C 0.06 1.07 6.13 37.16 0.23 1.30 15 12 C 0.13 2.03 6.88 -4.04 -0.03 2.00 15 13 N -0.36 -5.40 3.68 -61.36 -0.23 -5.62 15 14 C 0.05 0.65 11.45 -17.22 -0.20 0.45 15 15 C -0.28 -3.19 10.80 -40.01 -0.43 -3.63 15 16 C 0.04 0.48 12.03 -17.36 -0.21 0.27 15 17 N -0.29 -4.71 12.42 30.63 0.38 -4.33 15 18 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 19 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 20 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 21 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.05 1.08 8.14 -51.93 -0.42 0.65 15 23 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 24 H 0.10 1.30 8.07 -51.93 -0.42 0.88 15 25 H 0.17 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.14 1.23 8.06 -52.49 -0.42 0.80 15 27 H 0.18 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 247.52 15.07 3.73 3.73 Total: -1.00 -32.80 247.52 -4.97 -37.76 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -3.35 Total: -4.15 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -0.86 Total: -7.99 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.89 Total: -36.20 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.36 Total: -9.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.80 -4.97 -37.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395408458.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.292 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds