Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.55701 * 119.19447 * 107.50848 * 12 10 9 14 14 C 1.55990 * 81.52889 * 161.32856 * 13 12 10 15 15 C 1.54886 * 119.96178 * 204.99958 * 12 10 9 16 16 C 1.56743 * 106.43309 * 58.39111 * 14 13 12 17 17 N 1.50239 * 117.57957 * 332.20563 * 12 10 9 18 18 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 19 19 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 20 20 H 1.09002 * 114.52586 * 274.48924 * 13 12 10 21 21 H 1.08999 * 114.52544 * 48.17149 * 13 12 10 22 22 H 1.08999 * 120.82881 * 197.34980 * 14 13 12 23 23 H 1.09001 * 114.44130 * 312.52772 * 15 12 10 24 24 H 1.08997 * 114.44590 * 85.93829 * 15 12 10 25 25 H 1.09000 * 111.44779 * 76.31267 * 16 14 13 26 26 H 1.08995 * 111.44548 * 201.24921 * 16 14 13 27 27 H 1.00901 * 111.00216 * 298.91679 * 17 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 6 6.3260 -2.7829 1.2776 14 6 7.4853 -2.9763 0.2520 15 6 6.3317 -3.5852 -0.5879 16 6 7.6946 -1.5893 -0.4474 17 7 6.2534 -1.1908 -0.6350 18 1 -0.4850 0.8400 0.0004 19 1 3.8649 -0.3633 -0.0014 20 1 6.4822 -1.9722 1.9893 21 1 5.9715 -3.7047 1.7388 22 1 8.3652 -3.5665 0.5082 23 1 5.9775 -4.5529 -0.2328 24 1 6.4912 -3.5500 -1.6656 25 1 8.2261 -0.8924 0.2006 26 1 8.1990 -1.6992 -1.4074 27 1 6.0127 -1.1026 -1.6109 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575457997.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = 3.453909 kcal Electronic energy + Delta-G solvation = -12495.188635 eV Core-core repulsion = 10254.041485 eV Total energy + Delta-G solvation = -2241.147150 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.25647 -39.54135 -36.09692 -33.81747 -32.07494 -29.35911 -26.79389 -26.19588 -23.26372 -21.07184 -20.81210 -19.93697 -18.23783 -17.11344 -16.23995 -15.82748 -15.70728 -15.34917 -14.93445 -14.40522 -13.94795 -13.59002 -13.15183 -12.93542 -12.46643 -12.36966 -12.31709 -12.10584 -11.97042 -11.57565 -11.14730 -10.47297 -10.30959 -9.65509 -8.48453 -6.08997 1.29419 1.30478 1.42648 1.75939 2.18503 2.82519 2.88821 3.04396 3.29078 3.44891 3.66616 3.94069 4.25422 4.47174 4.63806 4.77341 4.83350 4.90819 4.94839 4.97118 5.16337 5.31661 5.50653 5.87515 6.21285 6.52940 6.78845 7.33809 7.87096 8.68639 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051912 B = 0.011591 C = 0.010027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.239988 B = 2415.083528 C = 2791.792089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.960 3.040 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.241 1.241 7 C -0.338 4.338 8 H 0.058 0.942 9 N -0.573 5.573 10 C 0.477 3.523 11 O -0.628 6.628 12 C 0.021 3.979 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.047 3.953 17 N -0.654 5.654 18 H 0.282 0.718 19 H 0.393 0.607 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.147 0.853 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.795 1.238 -0.523 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.206 4.206 3 Si 0.780 3.220 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.164 1.164 7 C -0.467 4.467 8 H 0.077 0.923 9 N -0.211 5.211 10 C 0.264 3.736 11 O -0.514 6.514 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.129 4.129 15 C -0.190 4.190 16 C -0.081 4.081 17 N -0.285 5.285 18 H 0.092 0.908 19 H 0.230 0.770 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.165 0.835 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.078 1.222 0.014 18.119 hybrid contribution -0.537 -0.031 -0.713 0.893 sum 17.541 1.190 -0.699 17.595 Atomic orbital electron populations 1.69785 1.07923 1.29493 1.49287 1.26067 0.96459 1.02509 0.95595 0.85421 0.79271 0.77014 0.80297 1.17725 1.19229 1.16449 1.19120 0.81443 0.95200 1.50932 0.92338 1.42096 1.05783 1.07857 1.65385 1.19802 0.88633 0.83293 0.81837 1.90523 1.70621 1.33048 1.57195 1.23931 0.88626 0.92852 1.01937 1.23830 0.95343 1.01666 0.93861 1.24648 0.95883 0.97387 0.94943 1.24357 0.96926 0.97695 1.00015 1.23898 0.88460 0.94284 1.01434 1.64697 1.06085 1.36707 1.20978 0.90825 0.77045 0.90212 0.88783 0.83492 0.89849 0.91012 0.87697 0.88948 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.96 21.66 0.30 -56.29 15 2 C -0.01 -0.37 5.50 84.93 0.47 0.10 15 3 Si 0.96 41.08 27.74 68.60 1.90 42.98 15 4 H -0.25 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 6 H -0.24 -9.37 6.52 99.48 0.65 -8.72 15 7 C -0.34 -20.74 10.16 84.04 0.85 -19.89 15 8 H 0.06 4.20 7.39 -2.91 -0.02 4.18 15 9 N -0.57 -29.58 5.07 -306.98 -1.56 -31.14 15 10 C 0.48 23.68 7.57 87.66 0.66 24.34 15 11 O -0.63 -37.00 16.44 -3.07 -0.05 -37.05 15 12 C 0.02 0.74 2.27 -0.16 0.00 0.73 15 13 C -0.11 -3.08 7.66 28.22 0.22 -2.87 15 14 C -0.11 -2.24 6.40 -11.58 -0.07 -2.31 15 15 C -0.15 -4.28 7.10 27.63 0.20 -4.08 15 16 C 0.05 0.89 7.77 86.86 0.67 1.56 15 17 N -0.65 -18.47 7.39 -461.94 -3.41 -21.88 15 18 H 0.28 15.66 8.31 -92.71 -0.77 14.89 15 19 H 0.39 17.90 5.37 -92.71 -0.50 17.40 15 20 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.09 2.76 7.86 -2.39 -0.02 2.74 15 22 H 0.15 1.99 8.14 -2.39 -0.02 1.97 15 23 H 0.08 2.59 7.86 -2.39 -0.02 2.57 15 24 H 0.07 1.89 8.10 -2.39 -0.02 1.87 15 25 H 0.10 1.69 8.14 -2.39 -0.02 1.68 15 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 15 27 H 0.34 9.30 8.97 -89.69 -0.80 8.49 15 Total: -1.00 -75.11 232.18 0.01 -75.09 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.17 Total: 30.69 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 3.00 Total: -2.41 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.67 Total: -109.32 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.05 Total: -37.05 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.90 Total: 42.98 kcal Total: -75.11 0.01 -75.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575457997.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.547 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds