Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48490 * 109.47019 * 240.00178 * 3 2 1 5 5 H 1.48497 * 109.46782 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00145 * 3 2 1 7 7 C 1.39073 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00317 * 179.97438 * 7 2 1 9 9 N 1.36819 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99964 * 179.97438 * 9 7 2 11 11 O 1.21663 * 119.99998 * 0.02562 * 10 9 7 12 12 C 1.46955 * 119.99955 * 180.27514 * 10 9 7 13 13 C 1.32746 * 124.63030 * 179.74960 * 12 10 9 14 14 C 1.51117 * 110.73735 * 179.97438 * 13 12 10 15 15 C 1.54577 * 104.84491 * 16.60806 * 14 13 12 16 16 H 1.09006 * 110.97442 * 93.08799 * 15 14 13 17 17 N 1.46898 * 110.98226 * 216.84376 * 15 14 13 18 18 C 1.51110 * 124.63106 * 359.44941 * 12 10 9 19 19 H 0.96991 * 119.99791 * 359.97438 * 1 2 3 20 20 H 0.97000 * 120.00299 * 0.02562 * 9 7 2 21 21 H 1.08004 * 124.63388 * 359.93342 * 13 12 10 22 22 H 1.08994 * 110.36402 * 135.45145 * 14 13 12 23 23 H 1.09005 * 110.36395 * 257.77317 * 14 13 12 24 24 H 1.00908 * 110.99778 * 298.54928 * 17 15 14 25 25 H 1.00900 * 111.00146 * 62.49770 * 17 15 14 26 26 H 1.08999 * 110.36445 * 282.26811 * 18 12 10 27 27 H 1.09005 * 110.36102 * 44.58857 * 18 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1012 1.6964 -1.2124 5 1 1.2825 2.7464 0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0089 -1.2044 -0.0005 8 1 3.0889 -1.2044 -0.0010 9 7 1.3248 -2.3893 -0.0005 10 6 1.9987 -3.5565 -0.0016 11 8 3.2154 -3.5565 -0.0021 12 6 1.2640 -4.8291 -0.0077 13 6 1.8327 -6.0285 -0.0140 14 6 0.7850 -7.1176 -0.0184 15 6 -0.5217 -6.4082 -0.4410 16 1 -0.6701 -6.4734 -1.5189 17 7 -1.6765 -6.9595 0.2805 18 6 -0.2422 -4.9512 -0.0012 19 1 -0.4849 0.8400 0.0004 20 1 0.3548 -2.3893 -0.0005 21 1 2.8987 -6.2024 -0.0163 22 1 1.0463 -7.8923 -0.7392 23 1 0.6788 -7.5458 0.9784 24 1 -1.7977 -7.9397 0.0738 25 1 -1.5882 -6.8077 1.2741 26 1 -0.6328 -4.7731 1.0007 27 1 -0.6825 -4.2509 -0.7111 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575461725.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -30.408067 kcal Electronic energy + Delta-G solvation = -12036.227782 eV Core-core repulsion = 9793.612267 eV Total energy + Delta-G solvation = -2242.615515 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.09229 -37.28174 -34.02655 -32.53455 -31.28397 -28.20928 -26.65973 -24.87775 -21.08070 -20.27807 -18.21317 -17.45336 -16.24453 -16.18706 -14.83692 -14.52235 -14.00715 -13.42470 -13.24769 -12.65015 -12.51975 -12.10114 -11.57336 -11.49053 -11.19784 -11.08461 -10.94027 -10.46174 -10.25199 -9.58227 -8.71192 -8.45309 -8.39555 -8.02444 -6.50042 -3.84766 2.11382 3.21555 3.23138 3.27824 4.13534 4.33958 4.49139 4.76365 4.94569 5.14912 5.32062 5.34349 5.67184 5.69166 5.86858 5.89013 6.19948 6.31256 6.41959 6.94855 7.12417 7.13303 7.41677 7.47895 8.02410 8.57334 9.11581 9.49880 10.05031 10.66974 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.061340 B = 0.008605 C = 0.007637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.361272 B = 3253.203645 C = 3665.383232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.300 4.300 8 H 0.105 0.895 9 N -0.544 5.544 10 C 0.473 3.527 11 O -0.602 6.602 12 C -0.143 4.143 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.088 3.912 16 H 0.093 0.907 17 N -0.840 5.840 18 C -0.088 4.088 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.130 0.870 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.339 0.661 25 H 0.341 0.659 26 H 0.080 0.920 27 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 -9.904 0.396 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.430 4.430 8 H 0.123 0.877 9 N -0.177 5.177 10 C 0.262 3.738 11 O -0.490 6.490 12 C -0.147 4.147 13 C -0.154 4.154 14 C -0.170 4.170 15 C -0.024 4.024 16 H 0.111 0.889 17 N -0.368 5.368 18 C -0.126 4.126 19 H 0.085 0.915 20 H 0.229 0.771 21 H 0.148 0.852 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.151 0.849 25 H 0.154 0.846 26 H 0.098 0.902 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.361 -9.155 -0.025 9.753 hybrid contribution 0.575 0.217 0.492 0.788 sum -2.785 -8.938 0.467 9.373 Atomic orbital electron populations 1.69584 1.06090 1.28684 1.48814 1.25364 0.95657 0.99983 0.96891 0.85862 0.78803 0.80046 0.79232 1.19714 1.20812 1.19733 1.19756 0.93642 0.82333 1.47222 0.87674 1.41856 1.09453 1.04716 1.61671 1.17465 0.87279 0.83186 0.85893 1.90610 1.13381 1.87219 1.57766 1.22112 0.95140 0.94888 1.02572 1.23532 0.99072 0.93005 0.99804 1.22207 0.95690 0.97920 1.01169 1.22378 0.87137 0.94133 0.98775 0.88880 1.58847 1.42857 1.21711 1.13384 1.21321 0.92758 0.96075 1.02400 0.91483 0.77114 0.85189 0.91214 0.91000 0.84867 0.84587 0.90152 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 13.05 55.50 0.72 -23.57 15 2 C 0.02 0.65 5.50 -17.45 -0.10 0.55 15 3 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 15 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.30 -8.53 9.68 -15.02 -0.15 -8.67 15 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 15 9 N -0.54 -14.41 5.27 -12.10 -0.06 -14.48 15 10 C 0.47 12.11 7.74 -12.73 -0.10 12.01 15 11 O -0.60 -17.49 16.34 5.22 0.09 -17.40 15 12 C -0.14 -2.86 6.09 -102.77 -0.63 -3.49 15 13 C -0.13 -2.29 10.44 -35.98 -0.38 -2.67 15 14 C -0.13 -1.68 6.52 -26.85 -0.18 -1.85 15 15 C 0.09 1.15 4.31 -65.97 -0.28 0.87 15 16 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 17 N -0.84 -9.31 9.36 -3.19 -0.03 -9.34 15 18 C -0.09 -1.45 5.73 -26.77 -0.15 -1.60 15 19 H 0.28 7.05 8.31 -40.82 -0.34 6.71 15 20 H 0.39 9.98 6.89 -40.82 -0.28 9.70 15 21 H 0.13 2.31 8.03 -52.48 -0.42 1.89 15 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.07 0.83 8.08 -51.93 -0.42 0.41 15 24 H 0.34 2.98 9.07 -39.29 -0.36 2.62 15 25 H 0.34 3.53 8.77 -39.29 -0.34 3.18 15 26 H 0.08 1.29 7.87 -51.93 -0.41 0.88 15 27 H 0.08 1.37 7.81 -51.93 -0.41 0.96 15 LS Contribution 239.17 15.07 3.60 3.60 Total: -1.00 -31.26 239.17 -5.65 -36.91 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -2.99 Total: 13.16 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.95 Total: -4.85 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.63 Total: -47.39 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.09 Total: -17.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -31.26 -5.65 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575461725.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.498 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds