Wall clock time and date at job start Mon Mar 30 2020 02:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99694 * 2 1 4 4 H 1.48508 * 109.46921 * 270.00196 * 3 2 1 5 5 H 1.48495 * 109.47107 * 30.00470 * 3 2 1 6 6 H 1.48500 * 109.46719 * 150.00534 * 3 2 1 7 7 C 1.38954 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99592 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99829 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00043 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99752 * 180.02562 * 10 9 7 13 13 C 1.52997 * 119.52513 * 109.87462 * 12 10 9 14 14 C 1.52877 * 60.65287 * 113.31716 * 13 12 10 15 15 H 1.09005 * 120.20817 * 248.52179 * 14 13 12 16 16 C 1.54378 * 118.20771 * 91.50213 * 14 13 12 17 17 N 1.48560 * 104.69549 * 272.96685 * 16 14 13 18 18 C 1.48550 * 104.22569 * 39.42172 * 17 16 14 19 19 H 0.96996 * 120.00664 * 359.97438 * 1 2 3 20 20 H 0.97002 * 119.99947 * 359.97438 * 9 7 2 21 21 H 1.08992 * 117.44645 * 220.93367 * 13 12 10 22 22 H 1.08999 * 117.44146 * 5.64858 * 13 12 10 23 23 H 1.09002 * 110.41432 * 154.12603 * 16 14 13 24 24 H 1.09002 * 110.41130 * 31.80388 * 16 14 13 25 25 H 1.00903 * 110.99828 * 158.98388 * 17 16 14 26 26 H 1.09008 * 110.41398 * 79.29544 * 18 17 16 27 27 H 1.09000 * 110.41443 * 201.73726 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4002 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5609 -2.3704 -0.0011 13 6 6.3149 -2.8229 1.2509 14 6 6.4046 -3.6637 -0.0227 15 1 5.9428 -4.6503 -0.0622 16 6 7.5555 -3.3727 -1.0096 17 7 7.0328 -2.2974 -1.8915 18 6 6.2761 -1.4079 -0.9734 19 1 -0.4851 0.8400 0.0004 20 1 3.8649 -0.3632 -0.0014 21 1 7.1982 -2.2531 1.5388 22 1 5.7248 -3.2224 2.0758 23 1 7.7900 -4.2628 -1.5934 24 1 8.4390 -3.0278 -0.4723 25 1 7.7870 -1.7981 -2.3388 26 1 6.9581 -0.7548 -0.4288 27 1 5.5472 -0.8187 -1.5299 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575517799.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:05 Heat of formation + Delta-G solvation = -23.034760 kcal Electronic energy + Delta-G solvation = -12375.715604 eV Core-core repulsion = 10133.419820 eV Total energy + Delta-G solvation = -2242.295785 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.37680 -39.17375 -36.12249 -33.89552 -33.81218 -29.73925 -27.17073 -24.99973 -23.38965 -21.54172 -21.01763 -19.67115 -18.07416 -17.12255 -16.66124 -16.05213 -15.53357 -15.14530 -14.69452 -14.49667 -14.40365 -14.03679 -13.13671 -13.05112 -12.88717 -12.46348 -12.29025 -12.01345 -11.63330 -11.44436 -11.05343 -10.45064 -10.31801 -9.46909 -8.46837 -6.08685 1.26571 1.31324 1.41519 1.75234 2.19043 2.56341 2.79413 3.11030 3.33934 3.43793 3.63900 4.05698 4.12746 4.21001 4.48879 4.62609 4.71160 4.79325 4.88709 5.04567 5.21533 5.49207 5.64177 5.88193 6.48829 6.52099 6.79384 7.31836 7.87376 8.70772 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.051268 B = 0.010975 C = 0.009896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.021970 B = 2550.598660 C = 2828.695466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.962 3.038 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.233 1.233 7 C -0.337 4.337 8 H 0.054 0.946 9 N -0.578 5.578 10 C 0.491 3.509 11 O -0.633 6.633 12 C -0.193 4.193 13 C -0.098 4.098 14 C -0.135 4.135 15 H 0.099 0.901 16 C 0.074 3.926 17 N -0.681 5.681 18 C 0.079 3.921 19 H 0.282 0.718 20 H 0.390 0.610 21 H 0.139 0.861 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.356 0.644 26 H 0.085 0.915 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.388 2.811 0.299 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.209 4.209 3 Si 0.781 3.219 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.156 1.156 7 C -0.466 4.466 8 H 0.072 0.928 9 N -0.217 5.217 10 C 0.280 3.720 11 O -0.519 6.519 12 C -0.197 4.197 13 C -0.136 4.136 14 C -0.155 4.155 15 H 0.118 0.882 16 C -0.054 4.054 17 N -0.313 5.313 18 C -0.050 4.050 19 H 0.091 0.909 20 H 0.225 0.775 21 H 0.157 0.843 22 H 0.112 0.888 23 H 0.113 0.887 24 H 0.097 0.903 25 H 0.174 0.826 26 H 0.103 0.897 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.200 1.877 -0.043 18.297 hybrid contribution -0.105 1.016 0.427 1.107 sum 18.095 2.893 0.384 18.329 Atomic orbital electron populations 1.69791 1.08090 1.29499 1.49550 1.26123 0.96506 1.02680 0.95637 0.85416 0.79577 0.76676 0.80264 1.17800 1.19283 1.15588 1.19050 0.81318 0.95129 1.51066 0.92782 1.41906 1.05755 1.07292 1.66722 1.19572 0.88588 0.83158 0.80715 1.90510 1.71270 1.33310 1.56837 1.22397 0.89570 1.02575 1.05130 1.23199 1.00858 0.99793 0.89721 1.23639 0.97858 0.94508 0.99453 0.88235 1.22483 0.93925 0.96312 0.92689 1.63719 1.27560 1.12076 1.27914 1.22350 0.97085 0.93275 0.92317 0.90869 0.77468 0.84334 0.88815 0.88730 0.90296 0.82553 0.89701 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.96 21.66 0.30 -56.57 15 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 15 3 Si 0.96 39.49 27.74 68.60 1.90 41.40 15 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 6 H -0.23 -8.15 6.52 99.48 0.65 -7.50 15 7 C -0.34 -20.62 10.16 84.04 0.85 -19.77 15 8 H 0.05 3.92 7.39 -2.91 -0.02 3.90 15 9 N -0.58 -29.32 4.93 -306.98 -1.51 -30.83 15 10 C 0.49 24.58 7.38 87.66 0.65 25.23 15 11 O -0.63 -38.43 16.46 -3.06 -0.05 -38.48 15 12 C -0.19 -6.72 2.79 -51.97 -0.15 -6.86 15 13 C -0.10 -2.60 9.85 30.55 0.30 -2.30 15 14 C -0.14 -3.97 6.86 -9.88 -0.07 -4.03 15 15 H 0.10 3.38 8.14 -2.38 -0.02 3.36 15 16 C 0.07 1.57 7.27 86.45 0.63 2.19 15 17 N -0.68 -16.47 7.62 -500.87 -3.82 -20.29 15 18 C 0.08 2.14 6.83 86.45 0.59 2.73 15 19 H 0.28 15.63 8.31 -92.71 -0.77 14.86 15 20 H 0.39 16.59 5.31 -92.71 -0.49 16.09 15 21 H 0.14 2.45 8.14 -2.39 -0.02 2.43 15 22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.08 1.14 8.14 -2.39 -0.02 1.12 15 25 H 0.36 6.04 8.92 -89.69 -0.80 5.24 15 26 H 0.09 1.64 8.14 -2.38 -0.02 1.62 15 27 H 0.07 2.15 7.65 -2.39 -0.02 2.13 15 Total: -1.00 -78.99 234.52 -0.06 -79.05 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.16 Total: 28.65 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 3.28 Total: -2.93 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -5.03 Total: -107.69 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.05 Total: -38.48 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.40 kcal Total: -78.99 -0.06 -79.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575517799.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.016 kcal (2) G-P(sol) polarization free energy of solvation -78.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds