Wall clock time and date at job start Mon Mar 30 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30182 * 126.80027 * 2 1 4 4 O 1.20917 * 111.60625 * 179.73795 * 3 2 1 5 5 C 1.34047 * 111.56601 * 359.97438 * 4 3 2 6 6 C 1.35447 * 106.44742 * 0.02562 * 5 4 3 7 7 C 1.50700 * 128.00996 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47378 * 259.97658 * 7 6 5 9 9 C 1.46495 * 119.99862 * 270.00068 * 8 7 6 10 10 C 1.36935 * 120.00142 * 89.99454 * 8 7 6 11 11 H 1.07996 * 119.99953 * 22.64760 * 10 8 7 12 12 C 1.38813 * 120.00280 * 202.64620 * 10 8 7 13 13 N 1.31619 * 119.99958 * 11.46203 * 12 10 8 14 14 Si 1.86798 * 120.00353 * 191.46476 * 12 10 8 15 15 H 1.48502 * 109.46973 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47522 * 119.99635 * 14 12 10 17 17 H 1.48495 * 109.47043 * 239.99889 * 14 12 10 18 18 H 1.08993 * 109.46930 * 90.03189 * 1 2 3 19 19 H 1.09006 * 109.47012 * 210.02938 * 1 2 3 20 20 H 1.08998 * 109.47392 * 330.02923 * 1 2 3 21 21 H 1.08003 * 126.77494 * 180.02562 * 5 4 3 22 22 H 1.09004 * 109.46985 * 19.97314 * 7 6 5 23 23 H 1.08995 * 109.47132 * 139.96844 * 7 6 5 24 24 H 1.09005 * 109.47632 * 93.96751 * 9 8 7 25 25 H 1.09002 * 109.47249 * 213.96516 * 9 8 7 26 26 H 1.08998 * 109.47410 * 333.96241 * 9 8 7 27 27 H 0.96999 * 120.00560 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 0.0051 5 6 3.6025 -0.6067 0.0099 6 6 2.3540 -1.1320 0.0066 7 6 1.9591 -2.5863 0.0100 8 7 1.6048 -2.9995 -1.3501 9 6 0.2211 -2.8779 -1.8155 10 6 2.5671 -3.4992 -2.1864 11 1 3.4685 -3.9297 -1.7761 12 6 2.3839 -3.4523 -3.5616 13 7 1.4054 -2.7345 -4.0711 14 14 3.5260 -4.4082 -4.6892 15 1 4.5366 -5.1292 -3.8743 16 1 2.7367 -5.3870 -5.4791 17 1 4.2130 -3.4678 -5.6104 18 1 -0.3633 -0.0006 -1.0276 19 1 -0.3633 -0.8898 0.5143 20 1 -0.3634 0.8902 0.5134 21 1 4.5340 -1.1532 0.0153 22 1 2.7946 -3.1888 0.3667 23 1 1.1018 -2.7284 0.6680 24 1 0.0940 -1.9271 -2.3332 25 1 -0.0058 -3.6965 -2.4984 26 1 -0.4546 -2.9196 -0.9612 27 1 1.2771 -2.7020 -5.0320 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590344819.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:57 Heat of formation + Delta-G solvation = 60.793700 kcal Electronic energy + Delta-G solvation = -12573.991108 eV Core-core repulsion = 10335.330398 eV Total energy + Delta-G solvation = -2238.660710 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.66251 -37.83290 -35.49705 -33.52887 -32.25910 -29.65156 -28.02585 -27.76362 -23.90959 -22.07244 -21.81711 -18.75402 -18.37331 -18.19391 -16.79919 -15.73980 -15.44601 -15.14579 -14.73684 -14.14386 -14.00593 -13.39809 -13.22616 -13.07704 -12.82530 -12.53956 -12.32558 -12.01035 -11.93428 -11.66742 -10.66339 -10.64814 -10.18769 -8.82388 -7.82534 -5.30422 0.75197 1.42933 1.47806 1.50729 1.58487 2.52781 2.58022 3.32618 3.45996 3.84713 3.87075 4.23303 4.45780 4.66314 4.68969 4.86074 4.88507 4.97047 5.10847 5.12906 5.36481 5.38865 5.65919 5.77095 6.33186 7.15636 7.47529 7.86919 8.30531 9.21098 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042801 B = 0.012118 C = 0.010956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.037891 B = 2310.065952 C = 2555.048274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.012 3.988 3 N -0.408 5.408 4 O 0.077 5.923 5 C -0.060 4.060 6 C -0.216 4.216 7 C 0.216 3.784 8 N -0.606 5.606 9 C 0.179 3.821 10 C -0.256 4.256 11 H 0.080 0.920 12 C -0.056 4.056 13 N -0.940 5.940 14 Si 0.966 3.034 15 H -0.260 1.260 16 H -0.293 1.293 17 H -0.299 1.299 18 H 0.065 0.935 19 H 0.093 0.907 20 H 0.083 0.917 21 H 0.242 0.758 22 H 0.075 0.925 23 H 0.075 0.925 24 H -0.001 1.001 25 H 0.016 0.984 26 H 0.035 0.965 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 0.853 8.862 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.147 4.147 3 N -0.117 5.117 4 O 0.015 5.985 5 C -0.142 4.142 6 C -0.223 4.223 7 C 0.089 3.911 8 N -0.328 5.328 9 C 0.034 3.966 10 C -0.386 4.386 11 H 0.098 0.902 12 C -0.251 4.251 13 N -0.587 5.587 14 Si 0.795 3.205 15 H -0.184 1.184 16 H -0.221 1.221 17 H -0.226 1.226 18 H 0.084 0.916 19 H 0.112 0.888 20 H 0.102 0.898 21 H 0.258 0.742 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.816 2.146 8.707 9.005 hybrid contribution 0.443 -0.984 -1.255 1.655 sum 1.259 1.162 7.452 7.646 Atomic orbital electron populations 1.20154 0.85107 1.04195 1.02859 1.23922 1.00014 0.88839 1.01896 1.73679 0.90220 1.25387 1.22446 1.84655 1.21147 1.24360 1.68373 1.26285 1.01920 0.82528 1.03452 1.22826 0.92612 1.00496 1.06322 1.19424 0.99843 0.85437 0.86368 1.44304 1.05263 1.71946 1.11282 1.20573 0.83287 0.98169 0.94580 1.19657 1.00786 1.30510 0.87664 0.90184 1.25827 1.00087 1.00365 0.98786 1.70252 1.34697 1.43064 1.10687 0.85203 0.78597 0.77770 0.78903 1.18378 1.22052 1.22648 0.91621 0.88813 0.89775 0.74173 0.90675 0.90652 0.98243 0.96503 0.94671 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.09 10.39 71.24 0.74 -1.35 15 2 C 0.01 0.46 7.33 43.58 0.32 0.78 15 3 N -0.41 -16.28 12.07 -49.54 -0.60 -16.88 15 4 O 0.08 2.84 11.20 71.58 0.80 3.64 15 5 C -0.06 -2.03 12.26 67.17 0.82 -1.21 15 6 C -0.22 -8.12 5.91 -19.74 -0.12 -8.24 15 7 C 0.22 8.04 6.20 85.63 0.53 8.57 15 8 N -0.61 -28.77 2.91 -731.33 -2.13 -30.90 15 9 C 0.18 8.51 9.01 127.77 1.15 9.66 15 10 C -0.26 -13.36 9.67 84.03 0.81 -12.55 15 11 H 0.08 3.94 7.85 -2.91 -0.02 3.92 15 12 C -0.06 -3.07 5.12 84.86 0.43 -2.64 15 13 N -0.94 -55.53 10.61 21.65 0.23 -55.30 15 14 Si 0.97 44.32 29.57 68.60 2.03 46.35 15 15 H -0.26 -11.02 7.11 99.48 0.71 -10.32 15 16 H -0.29 -13.55 7.11 99.48 0.71 -12.84 15 17 H -0.30 -14.00 7.11 99.48 0.71 -13.30 15 18 H 0.07 2.29 8.03 -2.39 -0.02 2.27 15 19 H 0.09 2.59 7.98 -2.38 -0.02 2.57 15 20 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.24 6.09 8.06 -2.91 -0.02 6.07 15 22 H 0.08 2.53 8.03 -2.39 -0.02 2.51 15 23 H 0.08 2.44 7.70 -2.39 -0.02 2.42 15 24 H 0.00 -0.04 7.32 -2.38 -0.02 -0.06 15 25 H 0.02 0.86 7.19 -2.39 -0.02 0.84 15 26 H 0.03 1.37 7.85 -2.39 -0.02 1.35 15 27 H 0.24 14.19 8.31 -92.71 -0.77 13.42 15 Total: -1.00 -65.12 240.02 6.19 -58.93 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: 1.16 Total: 1.14 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 4.70 Total: -6.98 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -2.49 Total: -103.08 kcal Atomic # 8 Polarization: 2.84 SS G_CDS: 0.80 Total: 3.64 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.12 6.19 -58.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590344819.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.724 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds