Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.53820 * 2 1 4 4 C 1.53040 * 109.54036 * 239.83374 * 2 1 3 5 5 C 1.50561 * 109.58414 * 287.08794 * 4 2 1 6 6 N 1.27559 * 121.22385 * 325.96512 * 5 4 2 7 7 N 1.39825 * 121.44243 * 0.06165 * 6 5 4 8 8 C 1.46497 * 119.81375 * 199.24411 * 7 6 5 9 9 C 1.50698 * 109.46958 * 270.02391 * 8 7 6 10 10 H 1.08001 * 120.00198 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99813 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00041 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99884 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47054 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47182 * 119.99593 * 13 11 9 16 16 H 1.48496 * 109.46876 * 239.99790 * 13 11 9 17 17 C 1.34804 * 120.37189 * 19.26767 * 7 6 5 18 18 O 1.21301 * 120.22799 * 179.52121 * 17 7 6 19 19 H 1.08996 * 109.47245 * 300.00387 * 1 2 3 20 20 H 1.09000 * 109.46922 * 60.00121 * 1 2 3 21 21 H 1.09004 * 109.46988 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.45157 * 47.20828 * 4 2 1 23 23 H 1.09000 * 109.45098 * 167.13297 * 4 2 1 24 24 H 1.07993 * 119.36492 * 145.87463 * 5 4 2 25 25 H 1.08995 * 109.46743 * 30.02051 * 8 7 6 26 26 H 1.09001 * 109.46909 * 150.02149 * 8 7 6 27 27 H 0.97004 * 120.00365 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0419 -0.7248 -1.2469 5 6 1.8179 -2.2061 -1.0973 6 7 1.9007 -2.7757 0.0410 7 7 2.2013 -2.0516 1.1988 8 6 2.7000 -2.7504 2.3859 9 6 1.5371 -3.1667 3.2492 10 1 0.5275 -2.9337 2.9443 11 6 1.7620 -3.8441 4.4289 12 7 2.9913 -4.1274 4.8004 13 14 0.3204 -4.3609 5.4986 14 1 -0.9490 -3.9265 4.8622 15 1 0.3195 -5.8383 5.6482 16 1 0.4448 -3.7280 6.8362 17 6 2.0344 -0.7143 1.2290 18 8 2.2878 -0.0899 2.2375 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.5053 -0.3619 -2.1236 23 1 3.1076 -0.5304 -1.3679 24 1 1.5813 -2.7967 -1.9699 25 1 3.2594 -3.6341 2.0791 26 1 3.3527 -2.0854 2.9515 27 1 3.1496 -4.6043 5.6301 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601930643.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = -2.769302 kcal Electronic energy + Delta-G solvation = -12466.445364 eV Core-core repulsion = 10225.028355 eV Total energy + Delta-G solvation = -2241.417009 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.99976 -36.58915 -34.49028 -32.73504 -31.33247 -27.76391 -27.01194 -23.89555 -22.35257 -21.79412 -16.93607 -16.78812 -16.49470 -16.09029 -14.92246 -14.55047 -13.93922 -13.49315 -13.41137 -12.65755 -12.17771 -12.05669 -11.84806 -11.41095 -11.25842 -11.01550 -10.72424 -10.64493 -10.25752 -9.89791 -9.55389 -8.76668 -8.43286 -7.72444 -6.04226 -4.07741 2.23406 3.23771 3.32201 3.38527 3.44347 3.47403 4.45355 4.48456 4.75994 4.92371 5.12832 5.30440 5.37482 5.56524 5.72097 5.72870 5.89076 6.15961 6.23362 6.70300 7.18564 7.35225 7.44560 7.91273 8.18891 8.57042 8.89201 9.02407 9.55575 11.04680 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049789 B = 0.010608 C = 0.010346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.238175 B = 2638.823632 C = 2705.705012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.120 4.120 5 C 0.045 3.955 6 N -0.226 5.226 7 N -0.440 5.440 8 C 0.262 3.738 9 C -0.521 4.521 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.902 3.098 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.489 3.511 18 O -0.522 6.522 19 H 0.063 0.937 20 H 0.067 0.933 21 H 0.060 0.940 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.172 0.828 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 5.355 -12.853 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 H 0.123 0.877 4 C -0.160 4.160 5 C -0.170 4.170 6 N -0.030 5.030 7 N -0.260 5.260 8 C 0.144 3.856 9 C -0.560 4.560 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.730 3.270 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.276 3.724 18 O -0.396 6.396 19 H 0.082 0.918 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.189 0.811 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.889 4.820 -11.520 12.817 hybrid contribution -0.714 0.425 0.314 0.888 sum -3.603 5.245 -11.206 12.887 Atomic orbital electron populations 1.21697 0.92451 1.02880 1.02582 1.21488 0.98352 1.00981 0.93140 0.87664 1.21239 1.02643 0.93856 0.98297 1.26186 1.00458 0.94920 0.95450 1.73846 1.08209 1.27035 0.93928 1.49620 1.61142 1.04756 1.10484 1.19419 0.95253 0.92487 0.78395 1.21378 0.93058 1.36315 1.05209 0.92336 1.24919 0.96097 0.95748 0.97378 1.69937 1.19236 1.40850 1.23539 0.86373 0.82345 0.78130 0.80177 1.19816 1.20815 1.20851 1.20929 0.78718 0.83042 0.89751 1.90699 1.49487 1.65510 1.33861 0.91760 0.91423 0.92103 0.88991 0.89681 0.81093 0.93884 0.93029 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.04 37.16 0.34 -1.57 15 2 C -0.12 -1.79 3.14 -91.68 -0.29 -2.08 15 3 H 0.11 1.44 8.14 -51.93 -0.42 1.02 15 4 C -0.12 -1.41 5.66 -27.93 -0.16 -1.57 15 5 C 0.04 0.61 10.73 -14.12 -0.15 0.46 15 6 N -0.23 -4.47 11.34 32.37 0.37 -4.10 15 7 N -0.44 -10.35 3.44 -61.42 -0.21 -10.56 15 8 C 0.26 7.32 5.45 -5.20 -0.03 7.29 15 9 C -0.52 -15.54 9.38 -34.44 -0.32 -15.87 15 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 11 C 0.06 1.78 5.46 -17.82 -0.10 1.69 15 12 N -0.90 -27.29 13.29 55.43 0.74 -26.55 15 13 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 15 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 15 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 15 17 C 0.49 10.82 6.82 -10.91 -0.07 10.75 15 18 O -0.52 -13.67 16.70 5.54 0.09 -13.58 15 19 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 20 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.92 7.67 -51.93 -0.40 0.52 15 22 H 0.09 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.17 1.62 8.06 -52.49 -0.42 1.19 15 25 H 0.04 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.05 1.56 7.42 -51.93 -0.39 1.18 15 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -34.57 239.38 -4.50 -39.07 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: -3.29 Total: -4.51 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.78 Total: -0.89 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.89 Total: -41.22 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -34.57 -4.50 -39.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601930643.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.301 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds