Wall clock time and date at job start Mon Mar 30 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35043 * 126.39698 * 2 1 4 4 N 1.30492 * 108.70111 * 179.97438 * 3 2 1 5 5 C 1.34127 * 109.25746 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.98868 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46875 * 244.97315 * 6 5 4 8 8 O 1.42900 * 109.47221 * 124.97569 * 6 5 4 9 9 C 1.50699 * 109.47551 * 4.97068 * 6 5 4 10 10 H 1.08004 * 119.99712 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00205 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00092 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99771 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47590 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47119 * 120.00099 * 13 11 9 16 16 H 1.48503 * 109.47090 * 239.99579 * 13 11 9 17 17 C 1.34666 * 108.01828 * 359.72964 * 5 4 3 18 18 H 1.09001 * 109.47060 * 90.02847 * 1 2 3 19 19 H 1.09004 * 109.47073 * 210.02335 * 1 2 3 20 20 H 1.09000 * 109.47212 * 330.02418 * 1 2 3 21 21 H 1.08003 * 125.64571 * 359.97058 * 3 2 1 22 22 H 1.08996 * 109.47601 * 59.99746 * 7 6 5 23 23 H 1.08997 * 109.47471 * 180.02562 * 7 6 5 24 24 H 1.09008 * 109.47432 * 300.00176 * 7 6 5 25 25 H 0.96700 * 113.99676 * 299.99945 * 8 6 5 26 26 H 0.96998 * 120.00304 * 179.97438 * 12 11 9 27 27 H 1.08002 * 126.59017 * 180.28501 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5095 0.6903 0.0006 5 6 3.5461 -0.6504 0.0004 6 6 4.7891 -1.5024 0.0014 7 6 4.8660 -2.2938 -1.3058 8 8 4.7444 -2.4089 1.1051 9 6 6.0037 -0.6190 0.1258 10 1 5.8870 0.4524 0.1974 11 6 7.2636 -1.1783 0.1482 12 7 7.4056 -2.4829 0.0615 13 14 8.7690 -0.0832 0.3031 14 1 8.3420 1.3367 0.3843 15 1 9.5205 -0.4457 1.5315 16 1 9.6414 -0.2701 -0.8840 17 6 2.2773 -1.1017 0.0057 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 1.9334 2.1144 -0.0005 22 1 4.9000 -1.6025 -2.1477 23 1 5.7648 -2.9104 -1.3049 24 1 3.9875 -2.9329 -1.3958 25 1 4.6947 -1.9756 1.9682 26 1 8.2920 -2.8764 0.0768 27 1 1.9614 -2.1345 0.0113 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:41 Heat of formation + Delta-G solvation = 20.319012 kcal Electronic energy + Delta-G solvation = -12513.698215 eV Core-core repulsion = 10273.282391 eV Total energy + Delta-G solvation = -2240.415824 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.31889 -36.02669 -33.28408 -32.02757 -29.80073 -27.99512 -26.31685 -24.96024 -21.64913 -20.47620 -18.87378 -16.74626 -16.49995 -15.18427 -14.52256 -14.37396 -13.54919 -13.28625 -12.91052 -12.78163 -12.48694 -12.02695 -11.13528 -10.87915 -10.83013 -10.51079 -10.28368 -9.89691 -9.21107 -9.01931 -8.87985 -8.31954 -8.03031 -7.58109 -5.77699 -3.91440 2.69856 3.31224 3.41180 3.48832 3.56916 4.01304 4.58434 4.86420 5.19260 5.22957 5.39489 5.45431 5.53362 6.13299 6.30797 6.55500 6.86731 6.99453 7.19520 7.49108 7.73512 7.82555 8.01916 8.23537 8.49372 8.88989 9.19968 9.53516 9.81959 11.23599 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.057374 B = 0.011201 C = 0.010009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.907471 B = 2499.116759 C = 2796.695347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.476 5.476 3 C 0.150 3.850 4 N -0.463 5.463 5 C 0.019 3.981 6 C 0.317 3.683 7 C -0.114 4.114 8 O -0.558 6.558 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.869 5.869 13 Si 0.888 3.112 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.071 4.071 18 H 0.068 0.932 19 H 0.078 0.922 20 H 0.079 0.921 21 H 0.194 0.806 22 H 0.038 0.962 23 H 0.093 0.907 24 H 0.012 0.988 25 H 0.349 0.651 26 H 0.255 0.745 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 3.529 -0.083 12.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.162 5.162 3 C -0.131 4.131 4 N -0.181 5.181 5 C -0.111 4.111 6 C 0.277 3.723 7 C -0.172 4.172 8 O -0.360 6.360 9 C -0.573 4.573 10 H 0.091 0.909 11 C -0.131 4.131 12 N -0.507 5.507 13 Si 0.717 3.283 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.201 4.201 18 H 0.086 0.914 19 H 0.097 0.903 20 H 0.098 0.902 21 H 0.210 0.790 22 H 0.057 0.943 23 H 0.111 0.889 24 H 0.031 0.969 25 H 0.192 0.808 26 H 0.065 0.935 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.438 3.437 -0.584 11.958 hybrid contribution -0.118 0.583 0.476 0.762 sum -11.556 4.020 -0.108 12.236 Atomic orbital electron populations 1.21865 0.78106 1.03794 1.02688 1.45392 1.06697 1.07461 1.56680 1.25015 0.86350 0.93131 1.08597 1.70308 1.17621 1.12867 1.17345 1.22440 0.95513 0.90457 1.02653 1.17084 0.85573 0.84484 0.85204 1.21568 1.01296 0.99077 0.95283 1.86504 1.96692 1.37151 1.15695 1.21737 0.90162 0.94435 1.50970 0.90911 1.25031 0.98827 0.94750 0.94504 1.70021 1.22083 1.09446 1.49114 0.86606 0.83066 0.81327 0.77346 1.19664 1.21252 1.21220 1.22511 0.91346 0.91871 1.14377 0.91364 0.90305 0.90208 0.78952 0.94328 0.88881 0.96877 0.80759 0.93484 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 11.18 59.85 0.67 1.44 15 2 N -0.48 -7.63 3.15 -125.99 -0.40 -8.02 15 3 C 0.15 2.66 12.56 -90.38 -1.14 1.53 15 4 N -0.46 -10.71 10.05 -10.88 -0.11 -10.82 15 5 C 0.02 0.45 5.69 -82.86 -0.47 -0.02 15 6 C 0.32 8.44 0.87 -92.93 -0.08 8.36 15 7 C -0.11 -2.97 8.54 37.16 0.32 -2.65 15 8 O -0.56 -14.87 12.31 -35.23 -0.43 -15.30 15 9 C -0.53 -15.56 8.11 -34.44 -0.28 -15.84 15 10 H 0.07 2.19 6.92 -52.48 -0.36 1.83 15 11 C 0.07 2.08 5.24 -17.82 -0.09 1.99 15 12 N -0.87 -25.74 10.87 55.43 0.60 -25.14 15 13 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 15 14 H -0.27 -6.84 7.11 56.52 0.40 -6.44 15 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 17 C -0.07 -1.38 11.28 -16.56 -0.19 -1.57 15 18 H 0.07 0.58 8.14 -51.93 -0.42 0.16 15 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.08 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.19 2.51 8.06 -52.48 -0.42 2.09 15 22 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.09 2.63 6.07 -51.93 -0.32 2.31 15 24 H 0.01 0.29 8.10 -51.92 -0.42 -0.13 15 25 H 0.35 8.52 9.03 45.56 0.41 8.93 15 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.17 2.94 8.06 -52.49 -0.42 2.51 15 LS Contribution 237.83 15.07 3.58 3.58 Total: -1.00 -34.07 237.83 -5.39 -39.47 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -2.36 Total: 5.73 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.26 Total: -6.77 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.10 Total: -43.98 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.43 Total: -15.30 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -34.07 -5.39 -39.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.786 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds