Wall clock time and date at job start Mon Mar 30 2020 02:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35043 * 126.39698 * 2 1 4 4 N 1.30492 * 108.70111 * 179.97438 * 3 2 1 5 5 C 1.34127 * 109.25746 * 0.02562 * 4 3 2 6 6 C 1.50698 * 125.98868 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46875 * 244.97315 * 6 5 4 8 8 O 1.42900 * 109.47221 * 124.97569 * 6 5 4 9 9 C 1.50699 * 109.47551 * 4.97068 * 6 5 4 10 10 H 1.08004 * 119.99712 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00205 * 180.02562 * 9 6 5 12 12 N 1.31516 * 120.00092 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 119.99771 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47590 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47119 * 120.00099 * 13 11 9 16 16 H 1.48503 * 109.47090 * 239.99579 * 13 11 9 17 17 C 1.34666 * 108.01828 * 359.72964 * 5 4 3 18 18 H 1.09001 * 109.47060 * 90.02847 * 1 2 3 19 19 H 1.09004 * 109.47073 * 210.02335 * 1 2 3 20 20 H 1.09000 * 109.47212 * 330.02418 * 1 2 3 21 21 H 1.08003 * 125.64571 * 359.97058 * 3 2 1 22 22 H 1.08996 * 109.47601 * 59.99746 * 7 6 5 23 23 H 1.08997 * 109.47471 * 180.02562 * 7 6 5 24 24 H 1.09008 * 109.47432 * 300.00176 * 7 6 5 25 25 H 0.96700 * 113.99676 * 299.99945 * 8 6 5 26 26 H 0.96998 * 120.00304 * 179.97438 * 12 11 9 27 27 H 1.08002 * 126.59017 * 180.28501 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5095 0.6903 0.0006 5 6 3.5461 -0.6504 0.0004 6 6 4.7891 -1.5024 0.0014 7 6 4.8660 -2.2938 -1.3058 8 8 4.7444 -2.4089 1.1051 9 6 6.0037 -0.6190 0.1258 10 1 5.8870 0.4524 0.1974 11 6 7.2636 -1.1783 0.1482 12 7 7.4056 -2.4829 0.0615 13 14 8.7690 -0.0832 0.3031 14 1 8.3420 1.3367 0.3843 15 1 9.5205 -0.4457 1.5315 16 1 9.6414 -0.2701 -0.8840 17 6 2.2773 -1.1017 0.0057 18 1 -0.3633 -0.0005 -1.0277 19 1 -0.3633 -0.8898 0.5142 20 1 -0.3634 0.8902 0.5135 21 1 1.9334 2.1144 -0.0005 22 1 4.9000 -1.6025 -2.1477 23 1 5.7648 -2.9104 -1.3049 24 1 3.9875 -2.9329 -1.3958 25 1 4.6947 -1.9756 1.9682 26 1 8.2920 -2.8764 0.0768 27 1 1.9614 -2.1345 0.0113 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248039.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:41 Heat of formation + Delta-G solvation = -4.279476 kcal Electronic energy + Delta-G solvation = -12514.764885 eV Core-core repulsion = 10273.282391 eV Total energy + Delta-G solvation = -2241.482495 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.75826 -37.99040 -34.61879 -34.20457 -31.69037 -29.54515 -27.62935 -27.00764 -23.45080 -21.85639 -20.60720 -18.73585 -18.01528 -16.58216 -16.40382 -16.22891 -15.06556 -14.85483 -14.54611 -14.43511 -13.44313 -13.34942 -13.22279 -12.93488 -12.84399 -12.54015 -12.35861 -11.98310 -11.03952 -10.82906 -10.51227 -10.27107 -10.00992 -9.13243 -7.95728 -6.16547 1.29467 1.41877 1.43307 1.56957 2.14797 2.42777 2.49306 3.25576 3.90467 4.07454 4.20147 4.28669 4.52251 4.64003 4.75445 4.97735 5.03085 5.12256 5.45844 5.55621 5.83368 5.98846 6.09842 6.36059 6.58243 6.90010 7.39658 7.49173 7.70306 9.04139 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.057374 B = 0.011201 C = 0.010009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.907471 B = 2499.116759 C = 2796.695347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.465 5.465 3 C 0.165 3.835 4 N -0.523 5.523 5 C -0.027 4.027 6 C 0.308 3.692 7 C -0.105 4.105 8 O -0.569 6.569 9 C -0.550 4.550 10 H 0.054 0.946 11 C 0.027 3.973 12 N -0.894 5.894 13 Si 0.951 3.049 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.279 1.279 17 C -0.058 4.058 18 H 0.087 0.913 19 H 0.093 0.907 20 H 0.110 0.890 21 H 0.239 0.761 22 H 0.033 0.967 23 H 0.065 0.935 24 H 0.033 0.967 25 H 0.353 0.647 26 H 0.257 0.743 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.958 4.496 -0.005 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.149 5.149 3 C -0.118 4.118 4 N -0.243 5.243 5 C -0.156 4.156 6 C 0.268 3.732 7 C -0.163 4.163 8 O -0.372 6.372 9 C -0.588 4.588 10 H 0.072 0.928 11 C -0.174 4.174 12 N -0.532 5.532 13 Si 0.777 3.223 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.205 1.205 17 C -0.191 4.191 18 H 0.105 0.895 19 H 0.111 0.889 20 H 0.129 0.871 21 H 0.255 0.745 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.052 0.948 25 H 0.198 0.802 26 H 0.066 0.934 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.300 4.405 -0.507 14.020 hybrid contribution 0.311 0.324 0.452 0.637 sum -12.989 4.729 -0.056 13.823 Atomic orbital electron populations 1.22324 0.73926 1.06149 1.04670 1.45630 1.09002 1.05778 1.54500 1.25744 0.85153 0.95089 1.05776 1.70145 1.21136 1.12946 1.20064 1.21940 0.95793 0.90983 1.06838 1.16989 0.86740 0.84602 0.84846 1.21416 1.00796 0.98787 0.95317 1.86444 1.96868 1.37706 1.16175 1.21921 0.91836 0.93960 1.51098 0.92756 1.25724 1.01390 0.96011 0.94279 1.70138 1.22666 1.10690 1.49749 0.85645 0.79760 0.79282 0.77638 1.20007 1.20493 1.20456 1.22540 0.90632 0.93329 1.12600 0.89494 0.88852 0.87138 0.74522 0.94827 0.91600 0.94837 0.80236 0.93405 0.80216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.18 127.77 1.43 2.47 15 2 N -0.47 -13.36 3.15 -552.52 -1.74 -15.11 15 3 C 0.16 5.39 12.56 180.26 2.26 7.65 15 4 N -0.52 -23.97 10.05 -188.32 -1.89 -25.87 15 5 C -0.03 -1.26 5.69 41.39 0.24 -1.03 15 6 C 0.31 16.72 0.87 -12.29 -0.01 16.71 15 7 C -0.11 -5.56 8.54 71.98 0.61 -4.94 15 8 O -0.57 -30.86 12.31 -148.98 -1.83 -32.69 15 9 C -0.55 -32.77 8.11 25.60 0.21 -32.57 15 10 H 0.05 3.37 6.92 -2.91 -0.02 3.35 15 11 C 0.03 1.57 5.24 84.65 0.44 2.01 15 12 N -0.89 -53.90 10.87 21.45 0.23 -53.66 15 13 Si 0.95 46.53 29.54 68.60 2.03 48.56 15 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 15 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 16 H -0.28 -13.22 7.11 99.48 0.71 -12.52 15 17 C -0.06 -2.16 11.28 83.09 0.94 -1.23 15 18 H 0.09 1.05 8.14 -2.39 -0.02 1.03 15 19 H 0.09 1.18 8.14 -2.38 -0.02 1.16 15 20 H 0.11 1.03 8.14 -2.39 -0.02 1.01 15 21 H 0.24 5.17 8.06 -2.91 -0.02 5.15 15 22 H 0.03 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.07 3.81 6.07 -2.39 -0.01 3.80 15 24 H 0.03 1.55 8.10 -2.38 -0.02 1.54 15 25 H 0.35 17.73 9.03 -74.06 -0.67 17.07 15 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 15 27 H 0.18 6.02 8.06 -2.91 -0.02 6.00 15 Total: -1.00 -75.20 237.83 3.42 -71.78 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.50 Total: 17.91 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 6.12 Total: -10.92 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.40 Total: -94.63 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -1.83 Total: -32.69 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -75.20 3.42 -71.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248039.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.502 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds