Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35046 * 126.39564 * 2 1 4 4 N 1.30505 * 108.69711 * 179.76065 * 3 2 1 5 5 C 1.34128 * 109.25478 * 0.38177 * 4 3 2 6 6 C 1.50702 * 125.98608 * 179.88537 * 5 4 3 7 7 C 1.52994 * 109.47400 * 119.68658 * 6 5 4 8 8 O 1.42906 * 109.46694 * 239.69113 * 6 5 4 9 9 C 1.50700 * 109.47329 * 359.68418 * 6 5 4 10 10 H 1.08004 * 119.99698 * 25.19797 * 9 6 5 11 11 C 1.37876 * 120.00341 * 205.47451 * 9 6 5 12 12 N 1.31510 * 120.00168 * 174.39424 * 11 9 6 13 13 Si 1.86798 * 119.99789 * 354.39047 * 11 9 6 14 14 H 1.48498 * 109.47302 * 85.13670 * 13 11 9 15 15 H 1.48499 * 109.47223 * 205.13646 * 13 11 9 16 16 H 1.48501 * 109.47506 * 325.13508 * 13 11 9 17 17 C 1.34665 * 108.02072 * 359.61710 * 5 4 3 18 18 H 1.08991 * 109.47299 * 270.00353 * 1 2 3 19 19 H 1.09002 * 109.46778 * 30.00797 * 1 2 3 20 20 H 1.08999 * 109.46714 * 150.00111 * 1 2 3 21 21 H 1.07992 * 125.65229 * 359.97438 * 3 2 1 22 22 H 1.08994 * 109.47439 * 306.00998 * 7 6 5 23 23 H 1.09007 * 109.46955 * 66.00716 * 7 6 5 24 24 H 1.08995 * 109.47157 * 186.00304 * 7 6 5 25 25 H 0.96694 * 114.00457 * 59.99950 * 8 6 5 26 26 H 0.96995 * 120.00244 * 179.97438 * 12 11 9 27 27 H 1.07999 * 126.58674 * 180.24786 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0052 5 6 3.5460 -0.6505 0.0002 6 6 4.7891 -1.5025 0.0011 7 6 4.8016 -2.3849 1.2509 8 8 4.8014 -2.3282 -1.1652 9 6 6.0067 -0.6146 0.0008 10 1 5.9443 0.3876 0.3983 11 6 7.1990 -1.0798 -0.5121 12 7 8.2311 -0.2711 -0.6140 13 14 7.3484 -2.8587 -1.0621 14 1 6.8644 -2.9869 -2.4601 15 1 8.7701 -3.2815 -0.9898 16 1 6.5296 -3.7221 -0.1736 17 6 2.2772 -1.1017 0.0001 18 1 -0.3633 0.0001 1.0276 19 1 -0.3633 0.8899 -0.5140 20 1 -0.3633 -0.8900 -0.5138 21 1 1.9335 2.1144 -0.0004 22 1 4.6847 -1.7613 2.1372 23 1 3.9806 -3.1001 1.1990 24 1 5.7484 -2.9221 1.3069 25 1 4.7944 -1.8346 -1.9966 26 1 9.0700 -0.5984 -0.9744 27 1 1.9613 -2.1345 0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248040.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = 21.591591 kcal Electronic energy + Delta-G solvation = -12588.645827 eV Core-core repulsion = 10348.285186 eV Total energy + Delta-G solvation = -2240.360641 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.44636 -36.69475 -33.45767 -32.04336 -30.45766 -28.30704 -26.52092 -24.97801 -21.88463 -20.56389 -19.00841 -17.24369 -16.53646 -15.28403 -14.90565 -14.62393 -13.71415 -13.33530 -13.19277 -12.70742 -12.58035 -12.31460 -11.88787 -11.45364 -11.34135 -10.57828 -10.13979 -10.00946 -9.34381 -8.99076 -8.83087 -8.39002 -8.23005 -7.75721 -5.88197 -3.94601 2.57870 3.21352 3.62250 3.67328 3.81668 3.92354 4.72186 4.79301 5.12598 5.15649 5.32168 5.36090 5.42761 5.63098 5.99662 6.35061 6.54445 6.67273 6.81225 6.96158 7.35863 7.49454 7.64992 7.84763 8.45331 8.73131 9.04160 9.28790 9.74177 11.22197 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059990 B = 0.012084 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.631465 B = 2316.505347 C = 2549.727355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.475 5.475 3 C 0.154 3.846 4 N -0.452 5.452 5 C 0.019 3.981 6 C 0.288 3.712 7 C -0.121 4.121 8 O -0.567 6.567 9 C -0.530 4.530 10 H 0.090 0.910 11 C 0.066 3.934 12 N -0.898 5.898 13 Si 0.940 3.060 14 H -0.295 1.295 15 H -0.329 1.329 16 H -0.267 1.267 17 C -0.067 4.067 18 H 0.069 0.931 19 H 0.081 0.919 20 H 0.078 0.922 21 H 0.196 0.804 22 H 0.056 0.944 23 H 0.029 0.971 24 H 0.061 0.939 25 H 0.370 0.630 26 H 0.261 0.739 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -1.423 0.668 15.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.161 5.161 3 C -0.127 4.127 4 N -0.170 5.170 5 C -0.111 4.111 6 C 0.248 3.752 7 C -0.179 4.179 8 O -0.374 6.374 9 C -0.568 4.568 10 H 0.108 0.892 11 C -0.137 4.137 12 N -0.535 5.535 13 Si 0.776 3.224 14 H -0.223 1.223 15 H -0.261 1.261 16 H -0.194 1.194 17 C -0.198 4.198 18 H 0.087 0.913 19 H 0.099 0.901 20 H 0.097 0.903 21 H 0.213 0.787 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.217 0.783 26 H 0.070 0.930 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.625 -1.348 1.083 14.727 hybrid contribution -0.765 -0.785 -0.760 1.334 sum -15.390 -2.133 0.324 15.540 Atomic orbital electron populations 1.21884 0.77947 1.03901 1.02783 1.45434 1.06804 1.07400 1.56482 1.25101 0.86146 0.93242 1.08228 1.70369 1.17516 1.12485 1.16606 1.21903 0.94531 0.90646 1.03992 1.17575 0.88908 0.85815 0.82936 1.21896 1.00621 0.98324 0.97034 1.86135 1.94685 1.39438 1.17124 1.21380 0.92116 1.01637 1.41668 0.89231 1.25113 0.95396 0.98524 0.94622 1.69986 1.02592 1.35734 1.45229 0.85907 0.72725 0.84722 0.79060 1.22320 1.26076 1.19353 1.22487 0.91313 0.91965 1.14084 0.91261 0.90063 0.90297 0.78721 0.92495 0.95171 0.92007 0.78270 0.92958 0.81625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 11.18 59.85 0.67 1.37 15 2 N -0.48 -7.17 3.15 -126.00 -0.40 -7.57 15 3 C 0.15 2.65 12.56 -90.37 -1.14 1.52 15 4 N -0.45 -10.31 10.22 -10.87 -0.11 -10.42 15 5 C 0.02 0.43 5.72 -82.85 -0.47 -0.04 15 6 C 0.29 7.11 0.85 -92.93 -0.08 7.03 15 7 C -0.12 -2.74 8.28 37.15 0.31 -2.43 15 8 O -0.57 -13.47 8.60 -35.23 -0.30 -13.78 15 9 C -0.53 -15.61 8.49 -34.44 -0.29 -15.90 15 10 H 0.09 2.95 7.49 -52.48 -0.39 2.55 15 11 C 0.07 1.97 5.46 -17.82 -0.10 1.87 15 12 N -0.90 -28.65 13.96 55.43 0.77 -27.87 15 13 Si 0.94 24.73 24.14 -169.99 -4.10 20.63 15 14 H -0.30 -7.62 7.11 56.52 0.40 -7.22 15 15 H -0.33 -8.83 7.11 56.52 0.40 -8.42 15 16 H -0.27 -6.83 5.41 56.52 0.31 -6.52 15 17 C -0.07 -1.22 11.27 -16.56 -0.19 -1.41 15 18 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 19 H 0.08 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.20 2.48 8.06 -52.49 -0.42 2.06 15 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.06 1.46 5.73 -51.93 -0.30 1.16 15 25 H 0.37 8.26 8.81 45.56 0.40 8.66 15 26 H 0.26 7.85 8.31 -40.82 -0.34 7.51 15 27 H 0.17 2.62 8.06 -52.49 -0.42 2.19 15 LS Contribution 230.67 15.07 3.48 3.48 Total: -1.00 -35.67 230.67 -4.43 -40.10 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.48 Total: 3.41 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.29 Total: -7.98 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.27 Total: -45.86 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.30 Total: -13.78 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.10 Total: 20.63 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -35.67 -4.43 -40.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248040.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.696 kcal (2) G-P(sol) polarization free energy of solvation -35.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds