Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35046 * 126.39564 * 2 1 4 4 N 1.30505 * 108.69711 * 179.76065 * 3 2 1 5 5 C 1.34128 * 109.25478 * 0.38177 * 4 3 2 6 6 C 1.50702 * 125.98608 * 179.88537 * 5 4 3 7 7 C 1.52994 * 109.47400 * 119.68658 * 6 5 4 8 8 O 1.42906 * 109.46694 * 239.69113 * 6 5 4 9 9 C 1.50700 * 109.47329 * 359.68418 * 6 5 4 10 10 H 1.08004 * 119.99698 * 25.19797 * 9 6 5 11 11 C 1.37876 * 120.00341 * 205.47451 * 9 6 5 12 12 N 1.31510 * 120.00168 * 174.39424 * 11 9 6 13 13 Si 1.86798 * 119.99789 * 354.39047 * 11 9 6 14 14 H 1.48498 * 109.47302 * 85.13670 * 13 11 9 15 15 H 1.48499 * 109.47223 * 205.13646 * 13 11 9 16 16 H 1.48501 * 109.47506 * 325.13508 * 13 11 9 17 17 C 1.34665 * 108.02072 * 359.61710 * 5 4 3 18 18 H 1.08991 * 109.47299 * 270.00353 * 1 2 3 19 19 H 1.09002 * 109.46778 * 30.00797 * 1 2 3 20 20 H 1.08999 * 109.46714 * 150.00111 * 1 2 3 21 21 H 1.07992 * 125.65229 * 359.97438 * 3 2 1 22 22 H 1.08994 * 109.47439 * 306.00998 * 7 6 5 23 23 H 1.09007 * 109.46955 * 66.00716 * 7 6 5 24 24 H 1.08995 * 109.47157 * 186.00304 * 7 6 5 25 25 H 0.96694 * 114.00457 * 59.99950 * 8 6 5 26 26 H 0.96995 * 120.00244 * 179.97438 * 12 11 9 27 27 H 1.07999 * 126.58674 * 180.24786 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0052 5 6 3.5460 -0.6505 0.0002 6 6 4.7891 -1.5025 0.0011 7 6 4.8016 -2.3849 1.2509 8 8 4.8014 -2.3282 -1.1652 9 6 6.0067 -0.6146 0.0008 10 1 5.9443 0.3876 0.3983 11 6 7.1990 -1.0798 -0.5121 12 7 8.2311 -0.2711 -0.6140 13 14 7.3484 -2.8587 -1.0621 14 1 6.8644 -2.9869 -2.4601 15 1 8.7701 -3.2815 -0.9898 16 1 6.5296 -3.7221 -0.1736 17 6 2.2772 -1.1017 0.0001 18 1 -0.3633 0.0001 1.0276 19 1 -0.3633 0.8899 -0.5140 20 1 -0.3633 -0.8900 -0.5138 21 1 1.9335 2.1144 -0.0004 22 1 4.6847 -1.7613 2.1372 23 1 3.9806 -3.1001 1.1990 24 1 5.7484 -2.9221 1.3069 25 1 4.7944 -1.8346 -1.9966 26 1 9.0700 -0.5984 -0.9744 27 1 1.9613 -2.1345 0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248040.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = -5.915434 kcal Electronic energy + Delta-G solvation = -12589.838621 eV Core-core repulsion = 10348.285186 eV Total energy + Delta-G solvation = -2241.553435 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.81564 -38.54277 -34.71975 -34.28276 -32.25222 -29.76343 -27.66212 -27.03900 -23.58980 -21.88931 -20.66389 -19.17751 -18.02090 -17.01565 -16.44167 -16.34291 -15.13345 -14.88540 -14.63945 -14.59904 -14.01208 -13.50614 -13.37274 -13.33924 -13.14971 -12.42926 -12.30083 -11.99032 -11.19020 -10.72105 -10.60759 -10.30923 -10.11733 -9.19485 -8.20429 -6.29811 1.25713 1.51604 1.55022 1.76354 2.12510 2.37251 2.52776 3.14357 3.68137 3.94262 4.11984 4.19223 4.49462 4.52866 4.76469 4.77757 4.89637 4.96147 5.15364 5.43110 5.59467 5.67561 5.94134 6.26481 6.51009 6.78023 7.00867 7.42293 7.52853 8.94722 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059990 B = 0.012084 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.631465 B = 2316.505347 C = 2549.727355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.464 5.464 3 C 0.163 3.837 4 N -0.525 5.525 5 C -0.032 4.032 6 C 0.287 3.713 7 C -0.116 4.116 8 O -0.562 6.562 9 C -0.528 4.528 10 H 0.038 0.962 11 C 0.009 3.991 12 N -0.951 5.951 13 Si 1.006 2.994 14 H -0.284 1.284 15 H -0.338 1.338 16 H -0.251 1.251 17 C -0.044 4.044 18 H 0.088 0.912 19 H 0.107 0.893 20 H 0.097 0.903 21 H 0.234 0.766 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.374 0.626 26 H 0.262 0.738 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.515 -2.861 0.448 18.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.147 5.147 3 C -0.120 4.120 4 N -0.244 5.244 5 C -0.161 4.161 6 C 0.247 3.753 7 C -0.174 4.174 8 O -0.370 6.370 9 C -0.566 4.566 10 H 0.056 0.944 11 C -0.187 4.187 12 N -0.591 5.591 13 Si 0.840 3.160 14 H -0.211 1.211 15 H -0.270 1.270 16 H -0.176 1.176 17 C -0.177 4.177 18 H 0.106 0.894 19 H 0.125 0.875 20 H 0.116 0.884 21 H 0.250 0.750 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.222 0.778 26 H 0.070 0.930 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -17.871 -2.782 0.869 18.108 hybrid contribution 0.081 -0.195 -0.655 0.689 sum -17.791 -2.977 0.213 18.039 Atomic orbital electron populations 1.22340 0.73780 1.06226 1.04764 1.45693 1.09089 1.05800 1.54140 1.25685 0.85041 0.95165 1.06059 1.70222 1.21222 1.13412 1.19511 1.21522 0.95238 0.90785 1.08507 1.17400 0.88231 0.86002 0.83703 1.21793 1.01181 0.98526 0.95909 1.86070 1.94545 1.39174 1.17192 1.21594 0.94447 1.00326 1.40205 0.94371 1.25965 0.94937 1.02765 0.95053 1.70134 1.03438 1.37950 1.47590 0.84814 0.72280 0.79636 0.79301 1.21107 1.27048 1.17611 1.22645 0.90130 0.93633 1.11339 0.89376 0.87454 0.88447 0.74974 0.92691 0.91684 0.93442 0.77795 0.92962 0.78926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 11.18 127.77 1.43 2.32 15 2 N -0.46 -12.25 3.15 -552.55 -1.74 -14.00 15 3 C 0.16 5.25 12.56 180.26 2.26 7.51 15 4 N -0.52 -24.01 10.22 -188.32 -1.92 -25.93 15 5 C -0.03 -1.39 5.72 41.39 0.24 -1.15 15 6 C 0.29 14.06 0.85 -12.29 -0.01 14.05 15 7 C -0.12 -5.10 8.28 71.98 0.60 -4.50 15 8 O -0.56 -25.75 8.60 -148.98 -1.28 -27.03 15 9 C -0.53 -32.13 8.49 25.60 0.22 -31.91 15 10 H 0.04 2.66 7.49 -2.91 -0.02 2.64 15 11 C 0.01 0.58 5.46 84.66 0.46 1.04 15 12 N -0.95 -63.15 13.96 21.45 0.30 -62.85 15 13 Si 1.01 51.47 24.14 68.60 1.66 53.13 15 14 H -0.28 -13.86 7.11 99.48 0.71 -13.15 15 15 H -0.34 -17.63 7.11 99.48 0.71 -16.93 15 16 H -0.25 -12.06 5.41 99.48 0.54 -11.52 15 17 C -0.04 -1.44 11.27 83.09 0.94 -0.50 15 18 H 0.09 0.89 8.14 -2.39 -0.02 0.87 15 19 H 0.11 0.88 8.14 -2.39 -0.02 0.86 15 20 H 0.10 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.23 5.22 8.06 -2.91 -0.02 5.20 15 22 H 0.05 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.06 2.36 8.14 -2.38 -0.02 2.35 15 24 H 0.05 2.17 5.73 -2.39 -0.01 2.16 15 25 H 0.37 16.32 8.81 -74.06 -0.65 15.67 15 26 H 0.26 16.36 8.31 -92.71 -0.77 15.59 15 27 H 0.19 5.17 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -81.14 230.67 3.49 -77.65 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.35 Total: 12.18 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 6.13 Total: -13.15 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -3.37 Total: -102.78 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.28 Total: -27.03 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.66 Total: 53.13 kcal Total: -81.14 3.49 -77.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248040.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.738 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds