Wall clock time and date at job start Mon Mar 30 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30501 * 125.64547 * 2 1 4 4 C 1.34126 * 109.25271 * 179.97438 * 3 2 1 5 5 C 1.34663 * 108.02305 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.59430 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 205.02237 * 6 5 4 8 8 O 1.42899 * 109.47136 * 325.02542 * 6 5 4 9 9 C 1.50702 * 109.46869 * 85.02292 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.35040 * 125.65050 * 180.22714 * 2 1 3 18 18 C 1.46496 * 126.40228 * 0.07083 * 17 2 1 19 19 H 1.08999 * 109.46456 * 90.02791 * 1 2 3 20 20 H 1.09002 * 109.46773 * 210.02399 * 1 2 3 21 21 H 1.08999 * 109.47008 * 330.02756 * 1 2 3 22 22 H 1.08003 * 125.98922 * 179.97438 * 4 3 2 23 23 H 0.96699 * 113.99712 * 59.99989 * 8 6 5 24 24 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 25 25 H 1.08998 * 109.47103 * 270.12651 * 18 17 2 26 26 H 1.09003 * 109.46766 * 30.11819 * 18 17 2 27 27 H 1.08999 * 109.47544 * 150.11789 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 0.0006 5 6 3.5926 -0.6641 0.0004 6 6 4.8276 -1.5277 0.0003 7 1 4.5919 -2.4990 -0.4345 8 8 5.8507 -0.8959 -0.7719 9 6 5.3098 -1.7148 1.4158 10 1 4.7752 -1.2547 2.2337 11 6 6.4300 -2.4785 1.6673 12 7 6.8476 -2.6462 2.9030 13 14 7.3543 -3.2747 0.2527 14 1 8.4029 -2.3453 -0.2389 15 1 7.9885 -4.5330 0.7218 16 1 6.4064 -3.5790 -0.8491 17 7 2.2941 -1.0973 -0.0044 18 6 1.8427 -2.4910 -0.0113 19 1 -0.3632 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.4098 1.3412 0.0003 23 1 6.1113 -0.0251 -0.4417 24 1 7.6358 -3.1831 3.0798 25 1 1.7276 -2.8407 1.0146 26 1 0.8856 -2.5602 -0.5283 27 1 2.5789 -3.1088 -0.5255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606248104.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:22 Heat of formation + Delta-G solvation = 6.203892 kcal Electronic energy + Delta-G solvation = -12471.585320 eV Core-core repulsion = 10230.557419 eV Total energy + Delta-G solvation = -2241.027902 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.50037 -36.14873 -33.50325 -32.38530 -31.37565 -28.36031 -26.60454 -25.57053 -22.57503 -19.91409 -19.11434 -17.57039 -16.34748 -15.31669 -14.98527 -14.49720 -14.06149 -13.19528 -13.06977 -12.78002 -12.68511 -12.30780 -12.15799 -12.08574 -11.75699 -11.13770 -10.86736 -10.24877 -9.59623 -9.23487 -9.03621 -8.81218 -8.76817 -7.43511 -6.23744 -4.37571 2.69022 3.33162 3.35347 3.40595 3.50964 3.76241 4.38210 4.90845 5.04152 5.05816 5.29948 5.42982 5.63142 5.70373 5.72734 5.81576 5.91253 6.11497 6.36191 6.66917 7.26266 7.36002 7.43150 7.79668 8.17797 8.66593 8.71449 8.86478 9.36446 10.86086 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.011280 C = 0.010916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.143264 B = 2481.630225 C = 2564.514499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.170 3.830 3 N -0.493 5.493 4 C -0.045 4.045 5 C 0.007 3.993 6 C 0.261 3.739 7 H 0.065 0.935 8 O -0.576 6.576 9 C -0.555 4.555 10 H 0.076 0.924 11 C 0.085 3.915 12 N -0.886 5.886 13 Si 0.912 3.088 14 H -0.275 1.275 15 H -0.302 1.302 16 H -0.269 1.269 17 N -0.453 5.453 18 C 0.075 3.925 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.163 0.837 23 H 0.368 0.632 24 H 0.268 0.732 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.221 0.087 -6.121 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 N -0.212 5.212 4 C -0.191 4.191 5 C -0.108 4.108 6 C 0.203 3.797 7 H 0.082 0.918 8 O -0.381 6.381 9 C -0.593 4.593 10 H 0.094 0.906 11 C -0.121 4.121 12 N -0.522 5.522 13 Si 0.741 3.259 14 H -0.200 1.200 15 H -0.230 1.230 16 H -0.194 1.194 17 N -0.138 5.138 18 C -0.068 4.068 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.102 0.898 22 H 0.180 0.820 23 H 0.215 0.785 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.471 0.132 -6.358 11.407 hybrid contribution 0.896 -0.812 -0.111 1.214 sum -8.574 -0.680 -6.469 10.762 Atomic orbital electron populations 1.20024 0.85768 1.03309 1.02541 1.23003 0.95173 0.81822 1.09127 1.70061 1.02465 1.28468 1.20256 1.21740 0.94092 0.92375 1.10908 1.22578 0.86055 0.96521 1.05677 1.18319 0.79653 0.89380 0.92368 0.91774 1.86407 1.57285 1.36327 1.58119 1.21370 1.13026 1.33885 0.90995 0.90599 1.25019 0.96439 0.94672 0.95937 1.69941 1.24313 1.38538 1.19409 0.86279 0.80299 0.77603 0.81702 1.20028 1.23038 1.19443 1.44991 1.06343 1.07151 1.55298 1.21939 1.00928 0.80251 1.03656 0.91052 0.91415 0.89787 0.81954 0.78453 0.92253 0.90448 0.90323 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 9.97 36.01 0.36 -0.36 15 2 C 0.17 3.11 7.90 -155.41 -1.23 1.88 15 3 N -0.49 -10.35 11.25 -10.82 -0.12 -10.47 15 4 C -0.04 -0.97 11.25 -17.82 -0.20 -1.17 15 5 C 0.01 0.16 5.95 -81.60 -0.49 -0.33 15 6 C 0.26 6.20 2.62 -29.03 -0.08 6.12 15 7 H 0.06 1.53 6.14 -51.93 -0.32 1.21 15 8 O -0.58 -13.13 10.93 -35.23 -0.39 -13.52 15 9 C -0.56 -15.28 9.33 -34.44 -0.32 -15.60 15 10 H 0.08 2.33 7.98 -52.49 -0.42 1.91 15 11 C 0.08 2.38 5.47 -17.82 -0.10 2.29 15 12 N -0.89 -26.36 13.96 55.43 0.77 -25.58 15 13 Si 0.91 22.39 26.18 -169.99 -4.45 17.94 15 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.30 -7.34 7.11 56.52 0.40 -6.94 15 16 H -0.27 -6.49 6.54 56.52 0.37 -6.12 15 17 N -0.45 -8.60 3.15 -116.68 -0.37 -8.96 15 18 C 0.08 1.09 10.61 59.84 0.63 1.72 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 0.70 7.72 -51.93 -0.40 0.30 15 21 H 0.08 1.00 8.14 -51.93 -0.42 0.57 15 22 H 0.16 3.19 7.60 -52.48 -0.40 2.79 15 23 H 0.37 7.37 8.23 45.56 0.38 7.74 15 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.08 0.83 7.67 -51.93 -0.40 0.44 15 27 H 0.09 1.24 7.11 -51.93 -0.37 0.87 15 LS Contribution 234.52 15.07 3.53 3.53 Total: -1.00 -33.19 234.52 -4.80 -37.99 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.37 Total: 4.52 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.41 Total: -5.45 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.28 Total: -45.02 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.39 Total: -13.52 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.45 Total: 17.94 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -33.19 -4.80 -37.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248104.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.192 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds