Wall clock time and date at job start Mon Mar 30 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30501 * 125.64547 * 2 1 4 4 C 1.34126 * 109.25271 * 179.97438 * 3 2 1 5 5 C 1.34663 * 108.02305 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.59430 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47551 * 205.02237 * 6 5 4 8 8 O 1.42899 * 109.47136 * 325.02542 * 6 5 4 9 9 C 1.50702 * 109.46869 * 85.02292 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 6 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 6 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 N 1.35040 * 125.65050 * 180.22714 * 2 1 3 18 18 C 1.46496 * 126.40228 * 0.07083 * 17 2 1 19 19 H 1.08999 * 109.46456 * 90.02791 * 1 2 3 20 20 H 1.09002 * 109.46773 * 210.02399 * 1 2 3 21 21 H 1.08999 * 109.47008 * 330.02756 * 1 2 3 22 22 H 1.08003 * 125.98922 * 179.97438 * 4 3 2 23 23 H 0.96699 * 113.99712 * 59.99989 * 8 6 5 24 24 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 25 25 H 1.08998 * 109.47103 * 270.12651 * 18 17 2 26 26 H 1.09003 * 109.46766 * 30.11819 * 18 17 2 27 27 H 1.08999 * 109.47544 * 150.11789 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 0.0006 5 6 3.5926 -0.6641 0.0004 6 6 4.8276 -1.5277 0.0003 7 1 4.5919 -2.4990 -0.4345 8 8 5.8507 -0.8959 -0.7719 9 6 5.3098 -1.7148 1.4158 10 1 4.7752 -1.2547 2.2337 11 6 6.4300 -2.4785 1.6673 12 7 6.8476 -2.6462 2.9030 13 14 7.3543 -3.2747 0.2527 14 1 8.4029 -2.3453 -0.2389 15 1 7.9885 -4.5330 0.7218 16 1 6.4064 -3.5790 -0.8491 17 7 2.2941 -1.0973 -0.0044 18 6 1.8427 -2.4910 -0.0113 19 1 -0.3632 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.4098 1.3412 0.0003 23 1 6.1113 -0.0251 -0.4417 24 1 7.6358 -3.1831 3.0798 25 1 1.7276 -2.8407 1.0146 26 1 0.8856 -2.5602 -0.5283 27 1 2.5789 -3.1088 -0.5255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606248104.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:22 Heat of formation + Delta-G solvation = -18.938676 kcal Electronic energy + Delta-G solvation = -12472.675584 eV Core-core repulsion = 10230.557419 eV Total energy + Delta-G solvation = -2242.118165 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.99674 -37.99561 -34.92584 -34.51392 -32.73277 -30.07147 -27.99499 -27.11738 -24.44804 -21.45806 -20.60912 -19.56929 -17.94940 -17.00134 -16.66632 -16.20396 -15.73593 -15.04961 -14.40740 -14.17875 -14.10149 -13.85175 -13.51448 -13.35991 -13.10355 -12.95584 -12.80484 -12.04189 -11.56729 -10.98191 -10.92404 -10.75092 -10.39368 -9.03030 -8.41270 -6.59542 1.17572 1.39571 1.43785 1.56682 1.97911 2.19790 2.33374 2.92088 3.65716 3.85333 3.90116 4.04032 4.36297 4.40279 4.60017 4.67369 4.68683 4.78550 5.06806 5.14421 5.29948 5.60809 5.81958 6.02644 6.42650 6.53158 6.97658 7.18177 7.19866 8.72722 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.053408 B = 0.011280 C = 0.010916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.143264 B = 2481.630225 C = 2564.514499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.183 3.817 3 N -0.528 5.528 4 C -0.057 4.057 5 C -0.027 4.027 6 C 0.275 3.725 7 H 0.067 0.933 8 O -0.577 6.577 9 C -0.555 4.555 10 H 0.030 0.970 11 C 0.037 3.963 12 N -0.931 5.931 13 Si 0.976 3.024 14 H -0.272 1.272 15 H -0.297 1.297 16 H -0.259 1.259 17 N -0.457 5.457 18 C 0.065 3.935 19 H 0.097 0.903 20 H 0.095 0.905 21 H 0.090 0.910 22 H 0.168 0.832 23 H 0.379 0.621 24 H 0.272 0.728 25 H 0.078 0.922 26 H 0.124 0.876 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -0.573 -7.691 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 N -0.248 5.248 4 C -0.203 4.203 5 C -0.143 4.143 6 C 0.216 3.784 7 H 0.085 0.915 8 O -0.384 6.384 9 C -0.592 4.592 10 H 0.048 0.952 11 C -0.164 4.164 12 N -0.570 5.570 13 Si 0.802 3.198 14 H -0.198 1.198 15 H -0.224 1.224 16 H -0.183 1.183 17 N -0.142 5.142 18 C -0.076 4.076 19 H 0.116 0.884 20 H 0.113 0.887 21 H 0.109 0.891 22 H 0.185 0.815 23 H 0.228 0.772 24 H 0.081 0.919 25 H 0.097 0.903 26 H 0.143 0.857 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.875 -0.535 -7.930 13.470 hybrid contribution 1.215 -0.540 0.430 1.398 sum -9.660 -1.076 -7.500 12.277 Atomic orbital electron populations 1.20311 0.81466 1.05043 1.04747 1.24152 0.97363 0.80949 1.05480 1.70083 1.02341 1.29992 1.22397 1.21986 0.94997 0.92656 1.10691 1.22293 0.87042 0.96489 1.08462 1.17939 0.80530 0.90082 0.89833 0.91546 1.86332 1.57211 1.37154 1.57683 1.21486 1.12621 1.33099 0.92041 0.95181 1.25815 0.97283 0.95201 0.98147 1.70054 1.25323 1.39993 1.21585 0.85278 0.79052 0.76777 0.78715 1.19765 1.22427 1.18312 1.45266 1.05318 1.09028 1.54571 1.22286 1.02989 0.77858 1.04455 0.88439 0.88668 0.89097 0.81517 0.77188 0.91892 0.90322 0.85748 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.21 9.97 71.24 0.71 -0.50 15 2 C 0.18 6.29 7.90 138.13 1.09 7.38 15 3 N -0.53 -21.71 11.25 -188.13 -2.12 -23.83 15 4 C -0.06 -2.47 11.25 83.52 0.94 -1.53 15 5 C -0.03 -1.17 5.95 40.95 0.24 -0.93 15 6 C 0.28 12.94 2.62 29.10 0.08 13.01 15 7 H 0.07 3.08 6.14 -2.39 -0.01 3.07 15 8 O -0.58 -25.73 10.93 -148.98 -1.63 -27.36 15 9 C -0.55 -31.10 9.33 25.60 0.24 -30.86 15 10 H 0.03 1.92 7.98 -2.91 -0.02 1.90 15 11 C 0.04 2.08 5.47 84.66 0.46 2.54 15 12 N -0.93 -56.47 13.96 21.45 0.30 -56.17 15 13 Si 0.98 45.74 26.18 68.60 1.80 47.54 15 14 H -0.27 -12.60 7.11 99.48 0.71 -11.90 15 15 H -0.30 -13.55 7.11 99.48 0.71 -12.85 15 16 H -0.26 -11.61 6.54 99.48 0.65 -10.96 15 17 N -0.46 -16.59 3.15 -523.06 -1.65 -18.24 15 18 C 0.07 1.71 10.61 127.77 1.36 3.07 15 19 H 0.10 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.09 1.51 7.72 -2.39 -0.02 1.49 15 21 H 0.09 1.83 8.14 -2.39 -0.02 1.82 15 22 H 0.17 6.67 7.60 -2.91 -0.02 6.65 15 23 H 0.38 15.03 8.23 -74.06 -0.61 14.42 15 24 H 0.27 15.34 8.31 -92.71 -0.77 14.57 15 25 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.12 2.08 7.67 -2.39 -0.02 2.06 15 27 H 0.08 2.22 7.11 -2.39 -0.02 2.20 15 Total: -1.00 -72.13 234.52 2.33 -69.80 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.51 Total: 16.08 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 5.12 Total: -7.82 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.47 Total: -98.24 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -1.63 Total: -27.36 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.80 Total: 47.54 kcal Total: -72.13 2.33 -69.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606248104.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.860 kcal (2) G-P(sol) polarization free energy of solvation -72.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds