Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86803 * 119.99559 * 2 1 4 4 H 1.48495 * 109.47433 * 240.00158 * 3 2 1 5 5 H 1.48495 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46603 * 120.00456 * 3 2 1 7 7 C 1.38873 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00053 * 186.94946 * 7 2 1 9 9 N 1.37195 * 120.00244 * 6.94050 * 7 2 1 10 10 C 1.47046 * 125.40942 * 354.23831 * 9 7 2 11 11 C 1.54096 * 103.86448 * 179.97438 * 10 9 7 12 12 N 1.47059 * 103.86293 * 359.97438 * 11 10 9 13 13 C 1.46492 * 125.41164 * 180.02562 * 12 11 10 14 14 C 1.52999 * 117.50177 * 188.61987 * 13 12 11 15 15 C 1.53008 * 60.00202 * 252.51263 * 14 13 12 16 16 C 1.33948 * 109.17748 * 0.26186 * 12 11 10 17 17 O 1.21583 * 123.04287 * 179.73728 * 16 12 11 18 18 H 0.96997 * 120.00470 * 359.97438 * 1 2 3 19 19 H 1.09000 * 110.54949 * 61.40047 * 10 9 7 20 20 H 1.09008 * 110.54821 * 298.59334 * 10 9 7 21 21 H 1.09002 * 110.55250 * 241.40420 * 11 10 9 22 22 H 1.08998 * 110.55248 * 118.59434 * 11 10 9 23 23 H 1.09003 * 115.55226 * 334.33333 * 13 12 11 24 24 H 1.09009 * 117.49299 * 359.97438 * 14 13 12 25 25 H 1.08995 * 117.50443 * 145.01754 * 14 13 12 26 26 H 1.08993 * 117.49285 * 252.51013 * 15 14 13 27 27 H 1.08995 * 117.49983 * 107.48940 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 3.1024 1.6966 -1.2125 5 1 1.2836 2.7465 0.0006 6 1 3.1025 1.6964 1.2126 7 6 2.0092 -1.2026 -0.0005 8 1 3.0832 -1.2061 0.1126 9 7 1.3308 -2.3864 -0.1446 10 6 -0.1319 -2.5306 -0.1865 11 6 -0.3488 -4.0463 -0.3602 12 7 1.0149 -4.5952 -0.3984 13 6 1.3558 -6.0117 -0.5520 14 6 2.8214 -6.4097 -0.3667 15 6 2.2002 -6.4076 -1.7650 16 6 1.8958 -3.5950 -0.2653 17 8 3.0993 -3.7679 -0.2581 18 1 -0.4851 0.8400 0.0004 19 1 -0.5460 -1.9855 -1.0347 20 1 -0.5773 -2.1844 0.7463 21 1 -0.8706 -4.2536 -1.2945 22 1 -0.9018 -4.4532 0.4864 23 1 0.5960 -6.7172 -0.2158 24 1 3.5322 -5.6175 -0.1310 25 1 3.0262 -7.3772 0.0916 26 1 1.9962 -7.3737 -2.2264 27 1 2.5021 -5.6142 -2.4487 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606249754.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 30.639778 kcal Electronic energy + Delta-G solvation = -12649.924281 eV Core-core repulsion = 10409.955999 eV Total energy + Delta-G solvation = -2239.968282 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.95942 -36.43908 -34.97772 -33.31379 -30.71861 -27.83413 -25.24605 -22.30816 -21.99549 -21.53545 -18.72862 -17.39736 -15.75230 -15.35160 -15.07884 -14.70687 -13.98315 -13.33428 -12.71916 -12.55371 -12.32612 -11.85115 -11.54662 -11.06762 -10.97031 -10.92021 -10.37961 -10.31210 -10.17638 -9.90078 -9.05029 -8.49664 -7.93644 -7.52889 -6.27038 -3.73375 3.23956 3.27346 3.29607 3.56038 4.12456 4.25663 4.51921 5.20858 5.26011 5.30280 5.47445 5.52861 5.56110 5.91296 5.99455 6.05892 6.09887 6.47075 6.79712 6.95939 7.03044 7.30984 7.56499 7.75924 8.31042 8.67150 9.27463 9.46594 10.21038 10.83294 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.063342 B = 0.011108 C = 0.009777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.935299 B = 2520.048681 C = 2863.207998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.277 4.277 8 H 0.102 0.898 9 N -0.470 5.470 10 C 0.132 3.868 11 C 0.087 3.913 12 N -0.623 5.623 13 C 0.116 3.884 14 C -0.193 4.193 15 C -0.200 4.200 16 C 0.652 3.348 17 O -0.621 6.621 18 H 0.267 0.733 19 H 0.082 0.918 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.118 0.882 24 H 0.138 0.862 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 -7.333 -1.065 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.404 4.404 8 H 0.120 0.880 9 N -0.193 5.193 10 C 0.008 3.992 11 C -0.038 4.038 12 N -0.361 5.361 13 C 0.010 3.990 14 C -0.230 4.230 15 C -0.240 4.240 16 C 0.355 3.645 17 O -0.505 6.505 18 H 0.077 0.923 19 H 0.100 0.900 20 H 0.096 0.904 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.136 0.864 24 H 0.155 0.845 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.310 -7.187 -1.040 7.620 hybrid contribution 0.040 0.790 -0.043 0.792 sum -2.270 -6.397 -1.083 6.874 Atomic orbital electron populations 1.69873 1.05598 1.27339 1.51494 1.25179 0.95825 0.99226 0.97565 0.85884 0.78669 0.80485 0.78945 1.20026 1.20971 1.20011 1.19377 0.92657 0.80654 1.47706 0.88018 1.42795 1.05017 1.04138 1.67342 1.22107 0.83690 0.89433 1.03966 1.22592 0.84680 0.95855 1.00631 1.46337 1.06510 1.04373 1.78839 1.20963 0.94565 0.81152 1.02301 1.23756 0.97190 1.03401 0.98647 1.23333 1.06170 1.02134 0.92342 1.15805 0.84811 0.81288 0.82575 1.90578 1.12776 1.84029 1.63126 0.92265 0.90005 0.90404 0.91891 0.91973 0.86415 0.84471 0.89624 0.89259 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 10.40 55.49 0.58 -23.60 15 2 C 0.02 0.61 5.48 -17.47 -0.10 0.51 15 3 Si 0.93 21.14 29.56 -169.99 -5.02 16.11 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 7 C -0.28 -7.93 9.92 -14.92 -0.15 -8.08 15 8 H 0.10 3.00 7.68 -52.49 -0.40 2.59 15 9 N -0.47 -12.73 3.07 -119.61 -0.37 -13.10 15 10 C 0.13 3.04 5.65 -3.17 -0.02 3.02 15 11 C 0.09 1.61 7.68 -3.16 -0.02 1.58 15 12 N -0.62 -13.23 3.29 -171.20 -0.56 -13.79 15 13 C 0.12 2.01 6.94 -67.93 -0.47 1.54 15 14 C -0.19 -3.38 9.77 -26.73 -0.26 -3.64 15 15 C -0.20 -3.30 10.36 -26.72 -0.28 -3.57 15 16 C 0.65 17.09 8.13 -88.39 -0.72 16.38 15 17 O -0.62 -17.74 14.10 5.29 0.07 -17.66 15 18 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 19 H 0.08 1.95 7.38 -51.93 -0.38 1.57 15 20 H 0.08 1.84 7.64 -51.92 -0.40 1.45 15 21 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.12 1.63 8.14 -51.93 -0.42 1.21 15 24 H 0.14 3.00 5.31 -51.92 -0.28 2.73 15 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 27 H 0.09 1.76 8.14 -51.93 -0.42 1.33 15 LS Contribution 230.84 15.07 3.48 3.48 Total: -1.00 -31.24 230.84 -6.97 -38.21 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.13 Total: 2.61 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.01 Total: 7.74 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.35 Total: -50.49 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.07 Total: -17.66 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -31.24 -6.97 -38.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249754.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.852 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds