Wall clock time and date at job start Mon Mar 30 2020 01:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.85862 * 2 1 4 4 H 1.08002 * 120.00299 * 240.00452 * 3 2 1 5 5 C 1.37884 * 119.99942 * 59.72011 * 3 2 1 6 6 N 1.31514 * 119.99698 * 0.28408 * 5 3 2 7 7 Si 1.86794 * 119.99837 * 180.27476 * 5 3 2 8 8 H 1.48504 * 109.47196 * 60.00645 * 7 5 3 9 9 H 1.48504 * 109.46887 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47679 * 300.00280 * 7 5 3 11 11 C 1.51529 * 109.86825 * 120.97835 * 2 1 3 12 12 O 1.20751 * 120.95387 * 345.99061 * 11 2 1 13 13 C 1.51383 * 118.00604 * 165.92328 * 11 2 1 14 14 C 1.53118 * 109.06141 * 305.26164 * 13 11 2 15 15 C 1.53114 * 109.62160 * 58.31151 * 14 13 11 16 16 C 1.51213 * 109.02897 * 301.70582 * 15 14 13 17 17 O 1.20768 * 120.94559 * 234.74594 * 16 15 14 18 18 H 1.08998 * 109.47676 * 59.99808 * 1 2 3 19 19 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47463 * 299.99885 * 1 2 3 21 21 H 0.97005 * 119.99651 * 179.97438 * 6 5 3 22 22 H 1.08995 * 109.51494 * 185.39391 * 13 11 2 23 23 H 1.09004 * 109.61072 * 65.18812 * 13 11 2 24 24 H 1.08998 * 109.44678 * 298.26821 * 14 13 11 25 25 H 1.09000 * 109.42080 * 178.34303 * 14 13 11 26 26 H 1.08999 * 109.54600 * 181.83362 * 15 14 13 27 27 H 1.09005 * 109.61876 * 61.61448 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4174 0.0000 4 1 2.6651 1.7665 -0.8100 5 6 1.7098 2.2704 1.0312 6 7 0.9509 1.8452 2.0176 7 14 2.3380 4.0295 1.0273 8 1 1.8471 4.7277 -0.1879 9 1 1.8438 4.7343 2.2374 10 1 3.8231 4.0249 1.0296 11 6 2.0449 -0.7335 1.2218 12 8 1.3111 -0.9950 2.1444 13 6 3.5058 -1.1295 1.2499 14 6 3.8252 -1.9515 -0.0018 15 6 3.5042 -1.1290 -1.2528 16 6 2.0451 -0.7335 -1.2218 17 8 1.3111 -0.9945 -2.1446 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 0.7175 2.4452 2.7432 22 1 3.7038 -1.7277 2.1393 23 1 4.1273 -0.2342 1.2667 24 1 3.2247 -2.8611 -0.0017 25 1 4.8829 -2.2150 -0.0023 26 1 3.7013 -1.7268 -2.1427 27 1 4.1246 -0.2330 -1.2708 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642883221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:37 Heat of formation + Delta-G solvation = -90.188994 kcal Electronic energy + Delta-G solvation = -12980.564029 eV Core-core repulsion = 10703.063467 eV Total energy + Delta-G solvation = -2277.500562 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.50982 -37.41821 -34.34510 -33.59185 -30.52250 -27.82081 -25.54521 -24.16087 -21.03074 -20.01699 -18.08848 -16.17435 -15.43442 -15.14522 -14.56542 -13.96704 -13.83269 -13.54284 -12.88895 -12.47781 -11.88113 -11.78365 -11.44940 -11.11220 -11.04107 -10.84686 -10.71611 -10.44097 -10.35415 -10.24292 -9.45887 -8.77118 -8.46131 -8.03322 -6.20892 -4.38526 2.83608 3.18467 3.25958 3.27402 3.42548 4.23560 4.93483 5.00522 5.29237 5.36716 5.39945 5.69689 5.97922 6.11171 6.19810 6.27366 6.39765 6.62700 6.79691 6.89388 7.10128 7.36231 7.56648 7.79848 8.04715 8.41057 8.59120 8.94253 9.27031 10.79273 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.016065 C = 0.015495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.570399 B = 1742.515816 C = 1806.563427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.009 4.009 3 C -0.517 4.517 4 H 0.069 0.931 5 C 0.068 3.932 6 N -0.857 5.857 7 Si 0.903 3.097 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.384 3.616 12 O -0.453 6.453 13 C -0.171 4.171 14 C -0.098 4.098 15 C -0.170 4.170 16 C 0.376 3.624 17 O -0.477 6.477 18 H 0.039 0.961 19 H 0.014 0.986 20 H 0.093 0.907 21 H 0.269 0.731 22 H 0.073 0.927 23 H 0.099 0.901 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -3.144 -2.121 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.011 4.011 3 C -0.554 4.554 4 H 0.087 0.913 5 C -0.138 4.138 6 N -0.491 5.491 7 Si 0.730 3.270 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.258 3.742 12 O -0.325 6.325 13 C -0.209 4.209 14 C -0.136 4.136 15 C -0.208 4.208 16 C 0.253 3.747 17 O -0.352 6.352 18 H 0.058 0.942 19 H 0.033 0.967 20 H 0.112 0.888 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.443 -3.376 -1.913 6.684 hybrid contribution 0.534 1.116 0.087 1.240 sum 5.976 -2.260 -1.825 6.645 Atomic orbital electron populations 1.21491 0.94534 0.98346 1.03040 1.19586 0.96040 0.96137 0.89352 1.20397 1.34163 0.91859 1.09018 0.91273 1.25085 0.94486 0.99144 0.95126 1.69996 1.33451 1.36014 1.09668 0.86463 0.79259 0.83516 0.77793 1.19845 1.20974 1.19847 1.24839 0.88445 0.72906 0.87982 1.90234 1.60506 1.44717 1.37080 1.22296 0.98875 1.01574 0.98126 1.21272 1.01567 0.97777 0.93004 1.22286 0.97451 1.02077 0.99018 1.25190 0.89219 0.73044 0.87214 1.90261 1.60663 1.46390 1.37848 0.94181 0.96657 0.88812 0.92123 0.90848 0.88295 0.92102 0.90746 0.90501 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.02 7.18 37.16 0.27 -2.75 15 2 C -0.01 -0.23 0.53 -157.15 -0.08 -0.31 15 3 C -0.52 -13.13 7.91 -34.44 -0.27 -13.40 15 4 H 0.07 1.69 7.75 -52.49 -0.41 1.28 15 5 C 0.07 1.76 5.16 -17.82 -0.09 1.67 15 6 N -0.86 -23.56 10.04 55.43 0.56 -23.00 15 7 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 15 8 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 11 C 0.38 9.13 4.98 -28.29 -0.14 8.99 15 12 O -0.45 -12.14 16.32 6.01 0.10 -12.04 15 13 C -0.17 -3.13 6.01 -27.49 -0.17 -3.30 15 14 C -0.10 -1.49 5.93 -26.61 -0.16 -1.65 15 15 C -0.17 -2.86 6.00 -27.57 -0.17 -3.02 15 16 C 0.38 8.26 5.83 -28.38 -0.17 8.10 15 17 O -0.48 -11.43 16.94 5.99 0.10 -11.33 15 18 H 0.04 1.02 8.04 -51.93 -0.42 0.60 15 19 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 15 20 H 0.09 2.62 5.99 -51.93 -0.31 2.31 15 21 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 23 H 0.10 1.78 8.14 -51.93 -0.42 1.35 15 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 230.76 15.07 3.48 3.48 Total: -1.00 -29.74 230.76 -4.99 -34.74 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.23 Total: -1.09 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.98 Total: -5.68 kcal Atomic # 7 Polarization: -23.56 SS G_CDS: 0.56 Total: -23.00 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.20 Total: -23.37 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.74 -4.99 -34.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642883221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.453 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds