Wall clock time and date at job start Mon Mar 30 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 109.85862 * 2 1 4 4 H 1.08002 * 120.00299 * 240.00452 * 3 2 1 5 5 C 1.37884 * 119.99942 * 59.72011 * 3 2 1 6 6 N 1.31514 * 119.99698 * 0.28408 * 5 3 2 7 7 Si 1.86794 * 119.99837 * 180.27476 * 5 3 2 8 8 H 1.48504 * 109.47196 * 60.00645 * 7 5 3 9 9 H 1.48504 * 109.46887 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47679 * 300.00280 * 7 5 3 11 11 C 1.51529 * 109.86825 * 120.97835 * 2 1 3 12 12 O 1.20751 * 120.95387 * 345.99061 * 11 2 1 13 13 C 1.51383 * 118.00604 * 165.92328 * 11 2 1 14 14 C 1.53118 * 109.06141 * 305.26164 * 13 11 2 15 15 C 1.53114 * 109.62160 * 58.31151 * 14 13 11 16 16 C 1.51213 * 109.02897 * 301.70582 * 15 14 13 17 17 O 1.20768 * 120.94559 * 234.74594 * 16 15 14 18 18 H 1.08998 * 109.47676 * 59.99808 * 1 2 3 19 19 H 1.09002 * 109.47010 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47463 * 299.99885 * 1 2 3 21 21 H 0.97005 * 119.99651 * 179.97438 * 6 5 3 22 22 H 1.08995 * 109.51494 * 185.39391 * 13 11 2 23 23 H 1.09004 * 109.61072 * 65.18812 * 13 11 2 24 24 H 1.08998 * 109.44678 * 298.26821 * 14 13 11 25 25 H 1.09000 * 109.42080 * 178.34303 * 14 13 11 26 26 H 1.08999 * 109.54600 * 181.83362 * 15 14 13 27 27 H 1.09005 * 109.61876 * 61.61448 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4174 0.0000 4 1 2.6651 1.7665 -0.8100 5 6 1.7098 2.2704 1.0312 6 7 0.9509 1.8452 2.0176 7 14 2.3380 4.0295 1.0273 8 1 1.8471 4.7277 -0.1879 9 1 1.8438 4.7343 2.2374 10 1 3.8231 4.0249 1.0296 11 6 2.0449 -0.7335 1.2218 12 8 1.3111 -0.9950 2.1444 13 6 3.5058 -1.1295 1.2499 14 6 3.8252 -1.9515 -0.0018 15 6 3.5042 -1.1290 -1.2528 16 6 2.0451 -0.7335 -1.2218 17 8 1.3111 -0.9945 -2.1446 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 0.7175 2.4452 2.7432 22 1 3.7038 -1.7277 2.1393 23 1 4.1273 -0.2342 1.2667 24 1 3.2247 -2.8611 -0.0017 25 1 4.8829 -2.2150 -0.0023 26 1 3.7013 -1.7268 -2.1427 27 1 4.1246 -0.2330 -1.2708 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642883221.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:36 Heat of formation + Delta-G solvation = -109.040767 kcal Electronic energy + Delta-G solvation = -12981.381504 eV Core-core repulsion = 10703.063467 eV Total energy + Delta-G solvation = -2278.318036 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.25946 -39.26050 -36.00191 -35.36889 -32.46578 -29.30754 -27.55011 -25.95896 -22.56873 -21.75221 -19.88154 -17.98649 -17.26316 -16.77750 -16.39622 -15.58331 -15.45867 -15.26333 -14.63984 -14.17848 -13.66704 -13.35126 -13.10182 -12.92656 -12.86754 -12.73823 -12.55416 -12.22682 -11.81633 -11.74907 -11.37184 -10.73098 -10.18021 -9.87511 -8.17340 -6.41419 1.12679 1.44516 1.46798 1.55045 1.62606 2.38987 3.06195 3.39152 3.65816 4.05155 4.07368 4.22072 4.62860 4.69197 4.73439 4.79636 4.92361 5.03384 5.10715 5.28382 5.35733 5.42051 5.52899 5.77488 6.01445 6.60459 6.71207 7.12676 7.27973 8.82114 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.035725 B = 0.016065 C = 0.015495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.570399 B = 1742.515816 C = 1806.563427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.034 4.034 3 C -0.521 4.521 4 H 0.079 0.921 5 C 0.021 3.979 6 N -0.892 5.892 7 Si 0.967 3.033 8 H -0.273 1.273 9 H -0.290 1.290 10 H -0.254 1.254 11 C 0.375 3.625 12 O -0.497 6.497 13 C -0.164 4.164 14 C -0.090 4.090 15 C -0.160 4.160 16 C 0.372 3.628 17 O -0.506 6.506 18 H 0.029 0.971 19 H 0.011 0.989 20 H 0.067 0.933 21 H 0.264 0.736 22 H 0.088 0.912 23 H 0.108 0.892 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.105 0.895 27 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 -3.310 -2.901 10.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.036 4.036 3 C -0.559 4.559 4 H 0.097 0.903 5 C -0.182 4.182 6 N -0.528 5.528 7 Si 0.791 3.209 8 H -0.198 1.198 9 H -0.216 1.216 10 H -0.179 1.179 11 C 0.253 3.747 12 O -0.373 6.373 13 C -0.201 4.201 14 C -0.128 4.128 15 C -0.198 4.198 16 C 0.251 3.749 17 O -0.383 6.383 18 H 0.048 0.952 19 H 0.030 0.970 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.107 0.893 23 H 0.126 0.874 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.123 0.877 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.291 -3.547 -2.712 9.417 hybrid contribution -0.426 1.157 0.310 1.271 sum 7.865 -2.391 -2.403 8.564 Atomic orbital electron populations 1.21366 0.96920 0.97441 1.01110 1.19806 0.94697 0.97048 0.92020 1.20679 1.33852 0.92364 1.08967 0.90301 1.25895 0.94570 1.03011 0.94737 1.70168 1.34996 1.37206 1.10394 0.85462 0.79610 0.78579 0.77255 1.19810 1.21576 1.17857 1.25434 0.91021 0.71683 0.86600 1.90212 1.62350 1.46583 1.38153 1.22286 0.94226 1.02761 1.00856 1.21359 1.04747 0.96627 0.90045 1.22299 0.92754 1.03522 1.01183 1.25581 0.91881 0.71999 0.85417 1.90249 1.62177 1.47546 1.38354 0.95158 0.97029 0.91428 0.92639 0.89309 0.87410 0.91908 0.85602 0.87671 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.95 7.18 71.98 0.52 -5.44 15 2 C -0.03 -1.65 0.53 -53.89 -0.03 -1.68 15 3 C -0.52 -26.13 7.91 25.60 0.20 -25.93 15 4 H 0.08 3.71 7.75 -2.91 -0.02 3.69 15 5 C 0.02 1.06 5.16 84.66 0.44 1.50 15 6 N -0.89 -50.14 10.04 21.45 0.22 -49.93 15 7 Si 0.97 40.41 29.54 68.60 2.03 42.44 15 8 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 9 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 10 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 11 C 0.38 17.68 4.98 29.58 0.15 17.83 15 12 O -0.50 -27.22 16.32 -1.42 -0.02 -27.25 15 13 C -0.16 -5.50 6.01 30.10 0.18 -5.32 15 14 C -0.09 -2.30 5.93 30.67 0.18 -2.12 15 15 C -0.16 -4.68 6.00 30.05 0.18 -4.50 15 16 C 0.37 15.79 5.83 29.53 0.17 15.96 15 17 O -0.51 -23.98 16.94 -1.47 -0.02 -24.00 15 18 H 0.03 1.59 8.04 -2.39 -0.02 1.57 15 19 H 0.01 0.56 8.14 -2.39 -0.02 0.55 15 20 H 0.07 3.97 5.99 -2.39 -0.01 3.95 15 21 H 0.26 14.37 8.31 -92.70 -0.77 13.60 15 22 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.11 3.48 8.14 -2.38 -0.02 3.46 15 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 25 H 0.13 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.10 2.56 8.14 -2.39 -0.02 2.55 15 27 H 0.12 3.16 8.14 -2.38 -0.02 3.14 15 Total: -1.00 -66.21 230.76 5.34 -60.87 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.16 Total: 7.57 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 1.99 Total: -9.70 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.22 Total: -49.93 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -0.05 Total: -51.25 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -66.21 5.34 -60.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642883221.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.173 kcal (2) G-P(sol) polarization free energy of solvation -66.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds