Wall clock time and date at job start Mon Mar 30 2020 02:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47399 * 239.99786 * 3 2 1 5 5 H 1.48499 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47082 * 119.99802 * 3 2 1 7 7 C 1.37881 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47023 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.34949 * 126.03292 * 124.99906 * 11 10 9 13 13 C 1.35318 * 107.74247 * 179.97438 * 12 11 10 14 14 C 1.50700 * 126.04120 * 180.02562 * 13 12 11 15 15 O 1.42895 * 109.47179 * 270.00215 * 14 13 12 16 16 C 1.39875 * 107.92186 * 0.02562 * 13 12 11 17 17 N 1.30839 * 108.20184 * 359.97438 * 16 13 12 18 18 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47590 * 59.99579 * 9 7 2 20 20 H 1.08995 * 109.47096 * 299.99502 * 9 7 2 21 21 H 1.08998 * 109.47319 * 59.99973 * 10 9 7 22 22 H 1.09005 * 109.47113 * 299.99676 * 10 9 7 23 23 H 1.07997 * 126.13040 * 0.03555 * 12 11 10 24 24 H 1.09003 * 109.47079 * 30.00095 * 14 13 12 25 25 H 1.09002 * 109.47262 * 149.99741 * 14 13 12 26 26 H 0.96697 * 114.00021 * 179.97438 * 15 14 13 27 27 H 1.08003 * 125.89835 * 179.73925 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 1.6573 -5.9316 -0.8926 13 6 0.8045 -6.9226 -0.5438 14 6 0.6290 -8.2353 -1.2627 15 8 -0.3826 -8.0993 -2.2627 16 6 0.1144 -6.5132 0.6020 17 7 0.5382 -5.3195 0.9296 18 1 -0.4850 0.8400 0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 2.3335 -5.9404 -1.7346 24 1 1.5698 -8.5201 -1.7340 25 1 0.3331 -9.0040 -0.5487 26 1 -0.5488 -8.9077 -2.7666 27 1 -0.6408 -7.0824 1.1237 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693483733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:51 Heat of formation + Delta-G solvation = 16.523209 kcal Electronic energy + Delta-G solvation = -11735.779522 eV Core-core repulsion = 9495.199099 eV Total energy + Delta-G solvation = -2240.580423 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.71998 -36.59397 -34.25310 -32.32074 -30.40489 -29.33272 -25.77765 -24.24275 -21.91398 -20.18364 -19.56139 -17.30260 -16.81530 -15.84561 -14.73138 -14.46560 -14.39806 -14.04576 -13.43977 -12.83412 -12.36244 -12.27343 -11.69870 -11.39787 -11.01382 -10.72965 -10.38670 -10.11269 -9.90910 -9.71233 -9.31917 -8.85926 -8.44080 -8.01944 -6.07928 -4.13936 2.38904 3.08265 3.15524 3.29037 3.34071 3.36067 4.39081 4.73249 5.02587 5.21197 5.27780 5.33973 5.46529 5.71677 5.80858 6.10940 6.26475 6.40210 6.53698 7.05708 7.43408 7.58255 7.67498 7.75066 7.92553 8.20290 8.26518 8.92042 9.50592 11.03193 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076289 B = 0.006623 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.935574 B = 4226.789267 C = 4246.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.016 3.984 10 C 0.129 3.871 11 N -0.347 5.347 12 C 0.071 3.929 13 C -0.268 4.268 14 C 0.162 3.838 15 O -0.572 6.572 16 C 0.045 3.955 17 N -0.284 5.284 18 H 0.264 0.736 19 H 0.021 0.979 20 H 0.034 0.966 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.168 0.832 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.371 0.629 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 -14.169 -2.700 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.022 4.022 10 C 0.010 3.990 11 N -0.128 5.128 12 C -0.078 4.078 13 C -0.280 4.280 14 C 0.084 3.916 15 O -0.376 6.376 16 C -0.141 4.141 17 N -0.105 5.105 18 H 0.073 0.927 19 H 0.039 0.961 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.103 0.897 23 H 0.185 0.815 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.217 0.783 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.083 -12.291 -1.617 12.774 hybrid contribution 0.520 -0.282 -0.852 1.037 sum 3.603 -12.573 -2.469 13.310 Atomic orbital electron populations 1.69972 1.06153 1.27054 1.49404 1.25006 0.94865 0.99400 0.94866 0.86562 0.79501 0.82710 0.78666 1.20128 1.21158 1.20091 1.20984 0.92964 0.90448 1.52590 0.92348 1.19350 0.93987 0.89893 0.98936 1.22315 0.95055 0.79476 1.02163 1.49235 1.29394 1.14518 1.19604 1.22342 1.00916 0.88855 0.95706 1.19657 1.06455 0.99816 1.02112 1.20122 0.89849 0.93012 0.88666 1.86671 1.59566 1.39321 1.52076 1.23662 1.00066 0.93598 0.96747 1.77443 1.05285 1.13548 1.14267 0.92661 0.96086 0.94756 0.90622 0.89705 0.81468 0.93687 0.93359 0.78339 0.80764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.02 0.43 5.16 -27.88 -0.14 0.28 15 10 C 0.13 2.70 6.45 -4.04 -0.03 2.68 15 11 N -0.35 -7.05 3.68 -61.36 -0.23 -7.27 15 12 C 0.07 1.21 11.36 -17.22 -0.20 1.02 15 13 C -0.27 -4.34 5.73 -105.05 -0.60 -4.94 15 14 C 0.16 1.95 7.53 36.01 0.27 2.22 15 15 O -0.57 -7.40 13.64 -35.23 -0.48 -7.88 15 16 C 0.05 0.79 11.96 -17.36 -0.21 0.59 15 17 N -0.28 -6.04 12.42 30.63 0.38 -5.66 15 18 H 0.26 7.55 8.31 -40.82 -0.34 7.22 15 19 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.03 1.01 8.14 -51.93 -0.42 0.58 15 21 H 0.08 1.52 8.14 -51.93 -0.42 1.10 15 22 H 0.08 1.56 8.07 -51.93 -0.42 1.14 15 23 H 0.17 2.24 8.06 -52.49 -0.42 1.82 15 24 H 0.04 0.45 8.14 -51.93 -0.42 0.02 15 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.37 2.67 9.12 45.56 0.42 3.08 15 27 H 0.18 2.45 8.06 -52.48 -0.42 2.03 15 LS Contribution 246.70 15.07 3.72 3.72 Total: -1.00 -33.99 246.70 -4.71 -38.70 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -2.50 Total: -0.07 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.32 Total: -11.66 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.89 Total: -39.23 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.48 Total: -7.88 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -33.99 -4.71 -38.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693483733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.227 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds