Wall clock time and date at job start Mon Mar 30 2020 02:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48497 * 109.47399 * 239.99786 * 3 2 1 5 5 H 1.48499 * 109.46859 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47082 * 119.99802 * 3 2 1 7 7 C 1.37881 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47023 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.34949 * 126.03292 * 124.99906 * 11 10 9 13 13 C 1.35318 * 107.74247 * 179.97438 * 12 11 10 14 14 C 1.50700 * 126.04120 * 180.02562 * 13 12 11 15 15 O 1.42895 * 109.47179 * 270.00215 * 14 13 12 16 16 C 1.39875 * 107.92186 * 0.02562 * 13 12 11 17 17 N 1.30839 * 108.20184 * 359.97438 * 16 13 12 18 18 H 0.97001 * 120.00236 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47590 * 59.99579 * 9 7 2 20 20 H 1.08995 * 109.47096 * 299.99502 * 9 7 2 21 21 H 1.08998 * 109.47319 * 59.99973 * 10 9 7 22 22 H 1.09005 * 109.47113 * 299.99676 * 10 9 7 23 23 H 1.07997 * 126.13040 * 0.03555 * 12 11 10 24 24 H 1.09003 * 109.47079 * 30.00095 * 14 13 12 25 25 H 1.09002 * 109.47262 * 149.99741 * 14 13 12 26 26 H 0.96697 * 114.00021 * 179.97438 * 15 14 13 27 27 H 1.08003 * 125.89835 * 179.73925 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5125 -4.9309 0.0012 12 6 1.6573 -5.9316 -0.8926 13 6 0.8045 -6.9226 -0.5438 14 6 0.6290 -8.2353 -1.2627 15 8 -0.3826 -8.0993 -2.2627 16 6 0.1144 -6.5132 0.6020 17 7 0.5382 -5.3195 0.9296 18 1 -0.4850 0.8400 0.0004 19 1 0.6245 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 2.3335 -5.9404 -1.7346 24 1 1.5698 -8.5201 -1.7340 25 1 0.3331 -9.0040 -0.5487 26 1 -0.5488 -8.9077 -2.7666 27 1 -0.6408 -7.0824 1.1237 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693483733.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:51 Heat of formation + Delta-G solvation = -9.677204 kcal Electronic energy + Delta-G solvation = -11736.915657 eV Core-core repulsion = 9495.199099 eV Total energy + Delta-G solvation = -2241.716558 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.09162 -37.56072 -36.12074 -34.20715 -31.69264 -31.10767 -27.40606 -25.67664 -23.75388 -21.62623 -20.97037 -18.78107 -18.19923 -17.45540 -16.64705 -16.06106 -15.41044 -15.37216 -14.83396 -14.48502 -14.27252 -13.50416 -13.42415 -12.89727 -12.82819 -12.50593 -12.16860 -11.80154 -11.53894 -11.38183 -10.74791 -10.62942 -10.35936 -9.39980 -8.26203 -6.41354 1.03286 1.39721 1.44174 1.51993 1.71860 1.82021 2.38743 3.07826 3.66420 3.95053 4.03407 4.23885 4.37377 4.42393 4.51565 4.66421 4.80640 4.93182 5.20935 5.34013 5.45193 5.66823 5.77285 6.02133 6.23445 6.75552 6.84370 7.12160 7.29633 8.86388 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.076289 B = 0.006623 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.935574 B = 4226.789267 C = 4246.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.144 3.856 11 N -0.371 5.371 12 C 0.067 3.933 13 C -0.271 4.271 14 C 0.164 3.836 15 O -0.599 6.599 16 C 0.044 3.956 17 N -0.345 5.345 18 H 0.265 0.735 19 H -0.016 1.016 20 H -0.010 1.010 21 H 0.080 0.920 22 H 0.115 0.885 23 H 0.204 0.796 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.396 0.604 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -15.122 -3.591 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.096 0.904 9 C -0.011 4.011 10 C 0.024 3.976 11 N -0.152 5.152 12 C -0.081 4.081 13 C -0.283 4.283 14 C 0.086 3.914 15 O -0.408 6.408 16 C -0.141 4.141 17 N -0.167 5.167 18 H 0.074 0.926 19 H 0.003 0.997 20 H 0.009 0.991 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.220 0.780 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.246 0.754 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.715 -13.294 -2.524 14.330 hybrid contribution -0.064 -0.122 -0.597 0.613 sum 4.651 -13.417 -3.121 14.539 Atomic orbital electron populations 1.70145 1.08332 1.28166 1.50808 1.26111 0.95729 1.03973 0.94186 0.85323 0.78043 0.77066 0.79537 1.18438 1.21190 1.18844 1.21499 0.94064 0.91123 1.51873 0.90408 1.19100 0.94304 0.92685 0.95038 1.21974 0.93547 0.78239 1.03848 1.49107 1.30257 1.15020 1.20843 1.23061 1.01381 0.87974 0.95662 1.20245 1.05138 1.01304 1.01569 1.20228 0.91111 0.90954 0.89102 1.86579 1.59896 1.41677 1.52666 1.24291 0.99905 0.92668 0.97252 1.77378 1.07185 1.15774 1.16356 0.92636 0.99731 0.99117 0.90130 0.86705 0.77968 0.91015 0.91035 0.75436 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.68 13.29 21.45 0.28 -58.39 15 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 15 3 Si 0.98 43.90 29.54 68.60 2.03 45.93 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 15 7 C -0.55 -30.88 9.11 25.60 0.23 -30.64 15 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 15 9 C 0.03 1.46 5.16 29.85 0.15 1.62 15 10 C 0.14 6.03 6.45 86.38 0.56 6.59 15 11 N -0.37 -15.07 3.68 -348.04 -1.28 -16.35 15 12 C 0.07 2.16 11.36 83.54 0.95 3.11 15 13 C -0.27 -8.21 5.73 -20.14 -0.12 -8.32 15 14 C 0.16 3.37 7.53 71.24 0.54 3.91 15 15 O -0.60 -13.76 13.64 -148.98 -2.03 -15.80 15 16 C 0.04 1.53 11.96 85.24 1.02 2.55 15 17 N -0.35 -15.00 12.42 -57.02 -0.71 -15.71 15 18 H 0.26 15.60 8.31 -92.71 -0.77 14.83 15 19 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 15 20 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 21 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 22 H 0.11 4.05 8.07 -2.38 -0.02 4.03 15 23 H 0.20 4.78 8.06 -2.91 -0.02 4.75 15 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 15 26 H 0.40 4.43 9.12 -74.06 -0.68 3.76 15 27 H 0.20 5.42 8.06 -2.91 -0.02 5.40 15 Total: -1.00 -76.05 246.70 2.57 -73.48 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.49 Total: 7.67 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.80 Total: -20.83 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -1.70 Total: -90.46 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -2.03 Total: -15.80 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -76.05 2.57 -73.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693483733.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.798 kcal (2) G-P(sol) polarization free energy of solvation -76.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds