Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46934 * 18.73971 * 3 2 1 5 5 C 1.36934 * 120.00476 * 265.66976 * 4 3 2 6 6 H 1.08001 * 119.99949 * 138.19997 * 5 4 3 7 7 C 1.38814 * 119.99793 * 318.21250 * 5 4 3 8 8 N 1.31612 * 119.99902 * 343.88142 * 7 5 4 9 9 Si 1.86797 * 119.99801 * 163.88275 * 7 5 4 10 10 H 1.48503 * 109.47429 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47475 * 119.99711 * 9 7 5 12 12 H 1.48503 * 109.47437 * 239.99676 * 9 7 5 13 13 C 1.46508 * 119.99780 * 85.94926 * 4 3 2 14 14 H 1.09001 * 112.84974 * 4.87173 * 13 4 3 15 15 C 1.53784 * 113.61308 * 233.67622 * 13 4 3 16 16 C 1.53781 * 87.07839 * 270.88466 * 15 13 4 17 17 C 1.53781 * 113.61299 * 136.17803 * 13 4 3 18 18 H 1.08997 * 113.61570 * 334.56691 * 17 13 4 19 19 O 1.42903 * 113.61320 * 203.66319 * 17 13 4 20 20 H 1.08995 * 109.46740 * 258.74400 * 3 2 1 21 21 H 1.08999 * 109.46869 * 138.74064 * 3 2 1 22 22 H 0.96999 * 119.99594 * 180.02562 * 8 7 5 23 23 H 1.09000 * 113.61714 * 25.43361 * 15 13 4 24 24 H 1.08999 * 113.61015 * 156.25283 * 15 13 4 25 25 H 1.08999 * 113.61399 * 89.12274 * 16 15 13 26 26 H 1.09003 * 113.61236 * 220.02129 * 16 15 13 27 27 H 0.96691 * 114.00112 * 180.02562 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3071 -0.4438 5 6 3.4100 -2.2700 0.4782 6 1 3.1241 -3.2970 0.3048 7 6 4.0946 -1.9261 1.6357 8 7 4.7170 -0.7690 1.7129 9 14 4.1324 -3.1055 3.0838 10 1 3.3610 -4.3287 2.7462 11 1 5.5389 -3.4743 3.3852 12 1 3.5270 -2.4510 4.2713 13 6 3.2566 -1.5827 -1.8738 14 1 3.0604 -0.7106 -2.4974 15 6 2.5254 -2.8520 -2.3420 16 6 3.8091 -3.6245 -1.9952 17 6 4.5690 -2.3064 -2.2188 18 1 5.3659 -2.1338 -1.4956 19 8 4.9920 -2.1115 -3.5698 20 1 2.9712 0.2014 1.0079 21 1 2.9709 0.7733 -0.6777 22 1 5.1957 -0.5289 2.5217 23 1 1.6726 -3.1199 -1.7181 24 1 2.2881 -2.8518 -3.4058 25 1 3.8412 -3.9777 -0.9646 26 1 4.0600 -4.4011 -2.7179 27 1 5.8166 -2.5645 -3.7929 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132194.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = 24.779427 kcal Electronic energy + Delta-G solvation = -12578.246838 eV Core-core repulsion = 10338.024432 eV Total energy + Delta-G solvation = -2240.222406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.89431 -35.96280 -34.78112 -33.16308 -31.01348 -26.81479 -25.37956 -24.06167 -22.08370 -18.70457 -17.63403 -16.35422 -15.94417 -15.27618 -14.40665 -14.30356 -13.49909 -13.39491 -12.94031 -12.38033 -11.96179 -11.65765 -11.51153 -11.18037 -11.06386 -10.78798 -10.62086 -10.32151 -10.07526 -9.94275 -9.28541 -8.90368 -8.70031 -6.87660 -6.10297 -3.75757 3.22089 3.32671 3.34514 3.61588 3.79281 4.28972 4.65502 5.02228 5.32113 5.48927 5.52144 5.64734 5.93724 5.97170 6.41789 6.43216 6.52530 6.65440 6.81527 6.95991 7.08624 7.14139 7.65553 8.17717 8.31966 8.58522 8.86816 9.45980 10.04441 10.92964 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.016950 C = 0.012350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.949416 B = 1651.519505 C = 2266.685471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.210 3.790 3 C 0.228 3.772 4 N -0.548 5.548 5 C -0.276 4.276 6 H 0.074 0.926 7 C 0.023 3.977 8 N -0.884 5.884 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.168 3.832 14 H 0.067 0.933 15 C -0.156 4.156 16 C -0.165 4.165 17 C 0.062 3.938 18 H 0.076 0.924 19 O -0.562 6.562 20 H 0.133 0.867 21 H 0.078 0.922 22 H 0.261 0.739 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.046 0.954 27 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -1.971 -4.362 5.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.109 4.109 3 C 0.098 3.902 4 N -0.267 5.267 5 C -0.405 4.405 6 H 0.092 0.908 7 C -0.179 4.179 8 N -0.525 5.525 9 Si 0.730 3.270 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.059 3.941 14 H 0.085 0.915 15 C -0.196 4.196 16 C -0.202 4.202 17 C 0.002 3.998 18 H 0.094 0.906 19 O -0.366 6.366 20 H 0.150 0.850 21 H 0.096 0.904 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.125 0.875 26 H 0.064 0.936 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.550 -1.523 -4.232 4.531 hybrid contribution 1.014 -1.031 0.849 1.677 sum 1.564 -2.555 -3.383 4.519 Atomic orbital electron populations 1.80939 1.14489 1.10568 1.11786 1.31917 0.97314 0.90953 0.90739 1.18795 0.77578 0.88712 1.05099 1.43310 1.71492 1.12277 0.99589 1.19203 1.31522 0.90594 0.99162 0.90834 1.25397 0.95177 0.97124 1.00200 1.69897 1.32324 1.22423 1.27808 0.86253 0.77635 0.80792 0.82334 1.19794 1.21188 1.21053 1.21397 0.91922 0.94944 0.85805 0.91478 1.23352 0.97469 0.99352 0.99418 1.23679 0.97549 0.96410 1.02603 1.23466 0.98041 0.96642 0.81686 0.90568 1.86374 1.44780 1.75703 1.29731 0.84971 0.90407 0.92852 0.92060 0.91378 0.87543 0.93562 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.36 18.54 42.15 0.78 -10.58 15 2 C 0.21 4.52 15.77 -20.76 -0.33 4.19 15 3 C 0.23 4.78 5.71 -6.83 -0.04 4.74 15 4 N -0.55 -12.28 2.60 -168.04 -0.44 -12.72 15 5 C -0.28 -6.64 7.52 -15.06 -0.11 -6.75 15 6 H 0.07 1.79 5.59 -52.49 -0.29 1.50 15 7 C 0.02 0.56 5.01 -17.43 -0.09 0.48 15 8 N -0.88 -22.27 11.52 55.49 0.64 -21.63 15 9 Si 0.90 19.75 29.58 -169.99 -5.03 14.73 15 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 13 C 0.17 3.43 4.50 -67.11 -0.30 3.12 15 14 H 0.07 1.33 8.02 -51.93 -0.42 0.92 15 15 C -0.16 -2.99 7.49 -25.92 -0.19 -3.19 15 16 C -0.17 -3.04 7.30 -25.92 -0.19 -3.23 15 17 C 0.06 1.19 4.66 -25.92 -0.12 1.07 15 18 H 0.08 1.61 8.02 -51.93 -0.42 1.19 15 19 O -0.56 -9.57 13.59 -35.23 -0.48 -10.05 15 20 H 0.13 3.01 5.70 -51.93 -0.30 2.71 15 21 H 0.08 1.44 8.06 -51.93 -0.42 1.03 15 22 H 0.26 6.38 8.31 -40.82 -0.34 6.04 15 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.11 2.13 5.27 -51.93 -0.27 1.85 15 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.37 4.53 9.12 45.56 0.42 4.94 15 LS Contribution 237.62 15.07 3.58 3.58 Total: -1.00 -27.08 237.62 -4.42 -31.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.10 Total: 4.75 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.37 Total: 0.43 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.98 Total: -44.94 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.48 Total: -10.05 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -27.08 -4.42 -31.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132194.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.280 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds