Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47140 * 264.93552 * 3 2 1 5 5 C 1.36938 * 119.99886 * 92.70715 * 4 3 2 6 6 H 1.07997 * 119.99855 * 168.54986 * 5 4 3 7 7 C 1.38809 * 120.00170 * 348.55386 * 5 4 3 8 8 N 1.31621 * 119.99952 * 338.51454 * 7 5 4 9 9 Si 1.86800 * 120.00155 * 158.52101 * 7 5 4 10 10 H 1.48497 * 109.47519 * 89.99481 * 9 7 5 11 11 H 1.48493 * 109.47038 * 209.99819 * 9 7 5 12 12 H 1.48499 * 109.46819 * 329.99668 * 9 7 5 13 13 C 1.46496 * 119.99948 * 272.71478 * 4 3 2 14 14 H 1.09000 * 112.84983 * 8.29848 * 13 4 3 15 15 C 1.53776 * 113.61924 * 139.50489 * 13 4 3 16 16 C 1.53777 * 87.08634 * 139.97836 * 15 13 4 17 17 C 1.53783 * 87.08119 * 334.56778 * 16 15 13 18 18 H 1.09001 * 113.61923 * 139.98071 * 17 16 15 19 19 O 1.42901 * 113.61648 * 270.88844 * 17 16 15 20 20 H 1.09001 * 109.47007 * 144.93617 * 3 2 1 21 21 H 1.08996 * 109.47253 * 24.93440 * 3 2 1 22 22 H 0.97000 * 120.00130 * 180.02562 * 8 7 5 23 23 H 1.09001 * 113.61443 * 254.52867 * 15 13 4 24 24 H 1.08999 * 113.61369 * 25.42531 * 15 13 4 25 25 H 1.09001 * 113.61599 * 89.11328 * 16 15 13 26 26 H 1.08995 * 113.61555 * 219.93689 * 16 15 13 27 27 H 0.96708 * 113.99373 * 277.49216 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1228 1.3758 5 6 3.3778 -1.0017 2.1048 6 1 3.9077 -0.9189 3.0422 7 6 2.9823 -2.2480 1.6389 8 7 2.0051 -2.3431 0.7622 9 14 3.8366 -3.7902 2.2561 10 1 3.1355 -4.2949 3.4640 11 1 3.8076 -4.8300 1.1963 12 1 5.2460 -3.4718 2.5988 13 6 3.2832 1.4479 1.9718 14 1 2.8913 2.2516 1.3483 15 6 2.8336 1.5322 3.4400 16 6 4.0775 2.4014 3.6891 17 6 4.7136 1.6998 2.4775 18 1 5.2910 2.3685 1.8391 19 8 5.4204 0.5043 2.8141 20 1 2.9709 0.8420 -0.5904 21 1 2.9717 -0.9310 -0.4332 22 1 1.7284 -3.2140 0.4369 23 1 1.8932 2.0657 3.5787 24 1 2.8587 0.5746 3.9599 25 1 3.9039 3.4664 3.5354 26 1 4.5787 2.1860 4.6327 27 1 6.3207 0.6563 3.1328 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 34.694047 kcal Electronic energy + Delta-G solvation = -12726.046530 eV Core-core repulsion = 10486.254054 eV Total energy + Delta-G solvation = -2239.792476 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.85405 -35.61762 -34.13158 -33.38978 -30.69484 -26.92219 -24.96682 -24.15132 -21.75582 -19.11017 -17.07798 -16.60261 -15.83051 -15.04648 -14.60419 -13.94556 -13.43402 -12.99548 -12.62729 -11.96567 -11.89262 -11.58557 -11.10511 -10.97757 -10.71915 -10.68075 -10.34047 -10.24701 -9.92221 -9.73213 -9.36493 -9.02370 -8.49462 -7.03839 -5.79865 -3.11362 3.43163 3.51046 3.55544 4.19850 4.46474 4.61896 4.78200 5.21804 5.33059 5.39577 5.53930 5.67504 5.76604 5.90114 6.07676 6.16048 6.31977 6.57191 6.66126 6.88151 7.07192 7.21654 8.00046 8.21217 8.43260 9.17282 9.28799 9.79625 10.21440 11.29373 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.018659 C = 0.012479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.884348 B = 1500.226312 C = 2243.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.253 3.747 3 C 0.251 3.749 4 N -0.562 5.562 5 C -0.221 4.221 6 H 0.099 0.901 7 C -0.013 4.013 8 N -0.916 5.916 9 Si 0.908 3.092 10 H -0.293 1.293 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.159 3.841 14 H 0.087 0.913 15 C -0.146 4.146 16 C -0.179 4.179 17 C 0.064 3.936 18 H 0.048 0.952 19 O -0.509 6.509 20 H 0.055 0.945 21 H 0.121 0.879 22 H 0.255 0.745 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.802 7.789 1.944 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 C -0.065 4.065 3 C 0.121 3.879 4 N -0.279 5.279 5 C -0.350 4.350 6 H 0.116 0.884 7 C -0.209 4.209 8 N -0.563 5.563 9 Si 0.738 3.262 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.204 1.204 13 C 0.049 3.951 14 H 0.105 0.895 15 C -0.186 4.186 16 C -0.217 4.217 17 C 0.001 3.999 18 H 0.066 0.934 19 O -0.311 6.311 20 H 0.072 0.928 21 H 0.138 0.862 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.508 7.313 1.666 9.306 hybrid contribution 1.189 -0.680 0.658 1.520 sum 6.698 6.633 2.324 9.709 Atomic orbital electron populations 1.80794 1.14579 1.13792 1.10535 1.30600 0.96360 0.88741 0.90820 1.18586 0.80280 1.01974 0.87080 1.44140 1.72684 1.01217 1.09851 1.19507 1.27494 0.82963 1.05033 0.88369 1.24845 0.97760 0.98081 1.00178 1.69910 1.26920 1.23521 1.35963 0.86188 0.79766 0.82782 0.77455 1.22012 1.21870 1.20411 1.22010 0.92013 0.88388 0.92703 0.89490 1.23408 0.95620 1.00087 0.99448 1.23459 1.00081 0.98647 0.99538 1.23690 0.95182 0.86621 0.94408 0.93446 1.87070 1.28290 1.28705 1.86986 0.92757 0.86161 0.93404 0.93170 0.88798 0.90769 0.91820 0.80772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -13.63 18.54 42.15 0.78 -12.85 15 2 C 0.25 6.24 13.72 -20.76 -0.28 5.96 15 3 C 0.25 5.53 5.43 -6.83 -0.04 5.49 15 4 N -0.56 -12.88 2.70 -168.05 -0.45 -13.34 15 5 C -0.22 -5.66 7.53 -15.06 -0.11 -5.78 15 6 H 0.10 2.54 5.30 -52.49 -0.28 2.26 15 7 C -0.01 -0.35 4.95 -17.43 -0.09 -0.44 15 8 N -0.92 -25.72 9.15 55.49 0.51 -25.21 15 9 Si 0.91 21.71 29.61 -169.99 -5.03 16.68 15 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 12 H -0.28 -6.55 7.11 56.52 0.40 -6.14 15 13 C 0.16 3.00 4.40 -67.12 -0.30 2.70 15 14 H 0.09 1.47 8.07 -51.93 -0.42 1.05 15 15 C -0.15 -2.69 7.45 -25.92 -0.19 -2.88 15 16 C -0.18 -2.62 7.91 -25.92 -0.21 -2.83 15 17 C 0.06 1.03 5.21 -25.91 -0.14 0.90 15 18 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 19 O -0.51 -9.06 10.34 -35.23 -0.36 -9.42 15 20 H 0.05 0.97 8.09 -51.93 -0.42 0.55 15 21 H 0.12 2.88 6.20 -51.93 -0.32 2.56 15 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 23 H 0.05 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.09 2.00 6.59 -51.93 -0.34 1.65 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.35 4.45 9.12 45.56 0.42 4.86 15 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -31.04 232.53 -4.60 -35.64 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.19 Total: 1.87 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.35 Total: 3.12 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.83 Total: -51.40 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.36 Total: -9.42 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.04 -4.60 -35.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.337 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds