Wall clock time and date at job start Mon Mar 30 2020 02:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47140 * 264.93552 * 3 2 1 5 5 C 1.36938 * 119.99886 * 92.70715 * 4 3 2 6 6 H 1.07997 * 119.99855 * 168.54986 * 5 4 3 7 7 C 1.38809 * 120.00170 * 348.55386 * 5 4 3 8 8 N 1.31621 * 119.99952 * 338.51454 * 7 5 4 9 9 Si 1.86800 * 120.00155 * 158.52101 * 7 5 4 10 10 H 1.48497 * 109.47519 * 89.99481 * 9 7 5 11 11 H 1.48493 * 109.47038 * 209.99819 * 9 7 5 12 12 H 1.48499 * 109.46819 * 329.99668 * 9 7 5 13 13 C 1.46496 * 119.99948 * 272.71478 * 4 3 2 14 14 H 1.09000 * 112.84983 * 8.29848 * 13 4 3 15 15 C 1.53776 * 113.61924 * 139.50489 * 13 4 3 16 16 C 1.53777 * 87.08634 * 139.97836 * 15 13 4 17 17 C 1.53783 * 87.08119 * 334.56778 * 16 15 13 18 18 H 1.09001 * 113.61923 * 139.98071 * 17 16 15 19 19 O 1.42901 * 113.61648 * 270.88844 * 17 16 15 20 20 H 1.09001 * 109.47007 * 144.93617 * 3 2 1 21 21 H 1.08996 * 109.47253 * 24.93440 * 3 2 1 22 22 H 0.97000 * 120.00130 * 180.02562 * 8 7 5 23 23 H 1.09001 * 113.61443 * 254.52867 * 15 13 4 24 24 H 1.08999 * 113.61369 * 25.42531 * 15 13 4 25 25 H 1.09001 * 113.61599 * 89.11328 * 16 15 13 26 26 H 1.08995 * 113.61555 * 219.93689 * 16 15 13 27 27 H 0.96708 * 113.99373 * 277.49216 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.1228 1.3758 5 6 3.3778 -1.0017 2.1048 6 1 3.9077 -0.9189 3.0422 7 6 2.9823 -2.2480 1.6389 8 7 2.0051 -2.3431 0.7622 9 14 3.8366 -3.7902 2.2561 10 1 3.1355 -4.2949 3.4640 11 1 3.8076 -4.8300 1.1963 12 1 5.2460 -3.4718 2.5988 13 6 3.2832 1.4479 1.9718 14 1 2.8913 2.2516 1.3483 15 6 2.8336 1.5322 3.4400 16 6 4.0775 2.4014 3.6891 17 6 4.7136 1.6998 2.4775 18 1 5.2910 2.3685 1.8391 19 8 5.4204 0.5043 2.8141 20 1 2.9709 0.8420 -0.5904 21 1 2.9717 -0.9310 -0.4332 22 1 1.7284 -3.2140 0.4369 23 1 1.8932 2.0657 3.5787 24 1 2.8587 0.5746 3.9599 25 1 3.9039 3.4664 3.5354 26 1 4.5787 2.1860 4.6327 27 1 6.3207 0.6563 3.1328 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:16 Heat of formation + Delta-G solvation = 12.481520 kcal Electronic energy + Delta-G solvation = -12727.009738 eV Core-core repulsion = 10486.254054 eV Total energy + Delta-G solvation = -2240.755683 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.26454 -37.41339 -35.87158 -34.95132 -32.56845 -28.72665 -26.60547 -25.51943 -23.39954 -20.59691 -18.85403 -18.07069 -17.57317 -16.73318 -15.98184 -15.71512 -15.20253 -14.54845 -14.21120 -13.74577 -13.58188 -13.10661 -12.91988 -12.87773 -12.58954 -12.27590 -12.13312 -11.79007 -11.58199 -11.47364 -10.96148 -10.47761 -10.22724 -8.87763 -7.80188 -5.09993 1.51216 1.55619 1.65200 2.32097 2.55135 2.67776 3.32425 3.57945 3.84989 3.96817 4.03795 4.09025 4.40644 4.47878 4.79726 4.91744 5.01140 5.11681 5.21970 5.41803 5.52832 5.63789 5.98168 6.39752 7.16454 7.34941 7.38917 7.93344 8.28953 9.26971 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.018659 C = 0.012479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.884348 B = 1500.226312 C = 2243.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C 0.265 3.735 3 C 0.250 3.750 4 N -0.575 5.575 5 C -0.201 4.201 6 H 0.095 0.905 7 C -0.069 4.069 8 N -0.945 5.945 9 Si 0.959 3.041 10 H -0.304 1.304 11 H -0.300 1.300 12 H -0.270 1.270 13 C 0.137 3.863 14 H 0.112 0.888 15 C -0.158 4.158 16 C -0.154 4.154 17 C 0.072 3.928 18 H 0.081 0.919 19 O -0.542 6.542 20 H 0.105 0.895 21 H 0.101 0.899 22 H 0.243 0.757 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 9.704 2.289 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.239 5.239 2 C -0.053 4.053 3 C 0.120 3.880 4 N -0.293 5.293 5 C -0.331 4.331 6 H 0.112 0.888 7 C -0.260 4.260 8 N -0.595 5.595 9 Si 0.790 3.210 10 H -0.232 1.232 11 H -0.227 1.227 12 H -0.195 1.195 13 C 0.029 3.971 14 H 0.129 0.871 15 C -0.197 4.197 16 C -0.192 4.192 17 C 0.010 3.990 18 H 0.098 0.902 19 O -0.347 6.347 20 H 0.123 0.877 21 H 0.119 0.881 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.124 0.876 26 H 0.090 0.910 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.284 9.273 2.041 11.967 hybrid contribution 0.696 -1.172 0.619 1.497 sum 7.980 8.101 2.660 11.678 Atomic orbital electron populations 1.80784 1.15904 1.15282 1.11931 1.31273 0.96948 0.87465 0.89585 1.18803 0.78610 1.03112 0.87465 1.44344 1.72533 1.02170 1.10224 1.19656 1.25276 0.83855 1.04273 0.88763 1.25373 0.98934 1.00204 1.01529 1.70055 1.28649 1.22776 1.38001 0.85377 0.79205 0.80337 0.76079 1.23246 1.22707 1.19460 1.22565 0.94495 0.87062 0.92930 0.87060 1.23361 0.97774 0.99436 0.99160 1.23380 0.96896 0.99537 0.99420 1.23503 0.93835 0.86432 0.95221 0.90158 1.86941 1.30235 1.30214 1.87351 0.87703 0.88116 0.94748 0.93150 0.92458 0.87610 0.91039 0.78020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -29.51 18.54 20.01 0.37 -29.14 15 2 C 0.26 12.93 13.72 89.44 1.23 14.16 15 3 C 0.25 10.66 5.43 84.57 0.46 11.12 15 4 N -0.58 -25.46 2.70 -685.58 -1.85 -27.31 15 5 C -0.20 -10.14 7.53 84.03 0.63 -9.51 15 6 H 0.09 4.82 5.30 -2.91 -0.02 4.80 15 7 C -0.07 -3.68 4.95 84.86 0.42 -3.26 15 8 N -0.94 -53.93 9.15 21.65 0.20 -53.73 15 9 Si 0.96 45.26 29.61 68.60 2.03 47.29 15 10 H -0.30 -14.75 7.11 99.48 0.71 -14.04 15 11 H -0.30 -14.40 7.11 99.48 0.71 -13.69 15 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 13 C 0.14 4.77 4.40 45.52 0.20 4.97 15 14 H 0.11 3.30 8.07 -2.39 -0.02 3.29 15 15 C -0.16 -5.50 7.45 31.12 0.23 -5.27 15 16 C -0.15 -3.87 7.91 31.12 0.25 -3.63 15 17 C 0.07 2.03 5.21 31.12 0.16 2.19 15 18 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 19 O -0.54 -17.66 10.34 -148.98 -1.54 -19.20 15 20 H 0.11 3.39 8.09 -2.39 -0.02 3.37 15 21 H 0.10 4.79 6.20 -2.39 -0.01 4.77 15 22 H 0.24 14.04 8.31 -92.71 -0.77 13.27 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.06 2.41 6.59 -2.39 -0.02 2.40 15 25 H 0.11 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 27 H 0.37 8.22 9.12 -74.05 -0.68 7.55 15 Total: -1.00 -67.14 232.53 3.30 -63.84 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.51 Total: 7.49 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 3.58 Total: 10.77 kcal Atomic # 7 Polarization: -108.90 SS G_CDS: -1.28 Total: -110.18 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.54 Total: -19.20 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -67.14 3.30 -63.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.319 kcal (2) G-P(sol) polarization free energy of solvation -67.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds