Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46965 * 124.89508 * 3 2 1 5 5 C 1.36932 * 120.00000 * 92.41978 * 4 3 2 6 6 H 1.08001 * 120.00076 * 225.90391 * 5 4 3 7 7 C 1.38810 * 119.99884 * 45.90398 * 5 4 3 8 8 N 1.31628 * 120.00045 * 212.59600 * 7 5 4 9 9 Si 1.86797 * 120.00319 * 32.59426 * 7 5 4 10 10 H 1.48498 * 109.47237 * 91.62465 * 9 7 5 11 11 H 1.48500 * 109.47195 * 211.62518 * 9 7 5 12 12 H 1.48507 * 109.47006 * 331.62402 * 9 7 5 13 13 C 1.46503 * 120.00120 * 272.41893 * 4 3 2 14 14 H 1.08999 * 112.84751 * 13.11812 * 13 4 3 15 15 C 1.53779 * 113.61624 * 241.92251 * 13 4 3 16 16 C 1.53781 * 87.07800 * 270.88515 * 15 13 4 17 17 C 1.53770 * 113.61438 * 144.42063 * 13 4 3 18 18 H 1.09003 * 113.61591 * 203.66434 * 17 13 4 19 19 O 1.42905 * 113.61928 * 334.57010 * 17 13 4 20 20 H 1.09001 * 109.47341 * 244.88973 * 3 2 1 21 21 H 1.09005 * 109.47383 * 4.89895 * 3 2 1 22 22 H 0.96993 * 119.99908 * 180.02562 * 8 7 5 23 23 H 1.09000 * 113.61323 * 25.42716 * 15 13 4 24 24 H 1.08993 * 113.61345 * 156.33192 * 15 13 4 25 25 H 1.09000 * 113.62103 * 89.11813 * 16 15 13 26 26 H 1.09002 * 113.61189 * 219.93416 * 16 15 13 27 27 H 0.96691 * 114.00269 * 180.02562 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7911 -1.1329 5 6 3.3708 2.1227 -0.9709 6 1 3.0213 2.8389 -1.6999 7 6 4.0986 2.5522 0.1303 8 7 3.8545 3.7316 0.6613 9 14 5.4246 1.4564 0.8587 10 1 6.7307 1.7733 0.2272 11 1 5.5123 1.6917 2.3223 12 1 5.0847 0.0331 0.6056 13 6 3.2899 0.1568 -2.4392 14 1 2.8297 -0.8292 -2.5034 15 6 4.7470 0.1896 -2.9297 16 6 4.4158 1.5446 -3.5772 17 6 2.9523 1.0746 -3.6259 18 1 2.6974 0.5340 -4.5374 19 8 2.0106 2.1009 -3.3061 20 1 2.9712 0.4369 0.9305 21 1 2.9719 -1.0231 -0.0878 22 1 4.3633 4.0318 1.4306 23 1 5.4776 0.2580 -2.1237 24 1 4.9827 -0.5930 -3.6508 25 1 4.5793 2.3960 -2.9166 26 1 4.8652 1.6799 -4.5610 27 1 1.7940 2.6812 -4.0486 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 33.535978 kcal Electronic energy + Delta-G solvation = -12808.993497 eV Core-core repulsion = 10569.150804 eV Total energy + Delta-G solvation = -2239.842694 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.94884 -35.88093 -34.49018 -33.35398 -31.46157 -26.91115 -25.39174 -23.96142 -21.88918 -18.53816 -17.98085 -16.70955 -16.00599 -15.09197 -14.56471 -14.23172 -13.36800 -13.16829 -12.81124 -12.69529 -12.11197 -11.74827 -11.45277 -11.17107 -11.00120 -10.81487 -10.64764 -10.29365 -10.21135 -9.70698 -9.34293 -8.90877 -8.45937 -6.83804 -6.10609 -3.52185 3.29117 3.44352 3.45938 3.59341 3.73022 4.47099 4.87302 5.02196 5.06135 5.18442 5.49173 5.51895 5.72976 5.75007 6.05492 6.08774 6.29257 6.38131 6.42470 6.71467 6.94933 7.21678 7.94806 8.42184 8.50131 8.59624 9.02122 9.64464 10.04511 11.01833 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.020493 C = 0.015469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.354196 B = 1365.993909 C = 1809.663653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.209 3.791 3 C 0.228 3.772 4 N -0.557 5.557 5 C -0.276 4.276 6 H 0.104 0.896 7 C 0.050 3.950 8 N -0.871 5.871 9 Si 0.840 3.160 10 H -0.285 1.285 11 H -0.294 1.294 12 H -0.261 1.261 13 C 0.165 3.835 14 H 0.064 0.936 15 C -0.163 4.163 16 C -0.160 4.160 17 C 0.062 3.938 18 H 0.061 0.939 19 O -0.525 6.525 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.264 0.736 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.042 0.958 27 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 -6.780 -6.258 9.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.161 5.161 2 C -0.111 4.111 3 C 0.098 3.902 4 N -0.276 5.276 5 C -0.404 4.404 6 H 0.121 0.879 7 C -0.154 4.154 8 N -0.508 5.508 9 Si 0.666 3.334 10 H -0.212 1.212 11 H -0.221 1.221 12 H -0.185 1.185 13 C 0.057 3.943 14 H 0.083 0.917 15 C -0.203 4.203 16 C -0.197 4.197 17 C 0.001 3.999 18 H 0.079 0.921 19 O -0.327 6.327 20 H 0.114 0.886 21 H 0.101 0.899 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.061 0.939 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.713 -6.905 -5.511 8.999 hybrid contribution 1.375 -0.165 -0.138 1.392 sum 3.089 -7.070 -5.649 9.562 Atomic orbital electron populations 1.80945 1.14279 1.10748 1.10079 1.31427 0.96924 0.91124 0.91622 1.19156 0.79374 0.97164 0.94473 1.43578 1.71573 1.08200 1.04247 1.19095 1.29757 0.81189 1.10326 0.87875 1.25756 0.97646 0.95095 0.96857 1.70072 1.38121 1.21533 1.21101 0.87354 0.85395 0.82952 0.77697 1.21227 1.22110 1.18490 1.21662 0.93241 0.93379 0.86013 0.91749 1.23232 0.99611 0.97202 1.00280 1.23656 0.96515 0.99842 0.99716 1.23894 0.88159 0.90398 0.97424 0.92124 1.86965 1.63309 1.44593 1.37793 0.88595 0.89922 0.92557 0.90987 0.91462 0.86807 0.93926 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.13 18.54 42.16 0.78 -10.35 15 2 C 0.21 4.49 15.77 -20.76 -0.33 4.17 15 3 C 0.23 4.53 4.64 -6.83 -0.03 4.50 15 4 N -0.56 -12.15 1.94 -168.05 -0.33 -12.48 15 5 C -0.28 -7.03 6.75 -15.06 -0.10 -7.13 15 6 H 0.10 2.92 5.28 -52.49 -0.28 2.64 15 7 C 0.05 1.32 4.98 -17.43 -0.09 1.23 15 8 N -0.87 -25.03 13.97 55.49 0.78 -24.25 15 9 Si 0.84 19.37 26.29 -169.99 -4.47 14.90 15 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 15 12 H -0.26 -5.46 6.22 56.52 0.35 -5.11 15 13 C 0.17 3.06 4.59 -67.12 -0.31 2.75 15 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 15 15 C -0.16 -2.74 7.74 -25.92 -0.20 -2.94 15 16 C -0.16 -2.80 7.35 -25.92 -0.19 -2.99 15 17 C 0.06 1.09 5.03 -25.92 -0.13 0.96 15 18 H 0.06 0.90 8.14 -51.93 -0.42 0.47 15 19 O -0.52 -10.45 10.76 -35.23 -0.38 -10.83 15 20 H 0.10 1.98 5.45 -51.93 -0.28 1.70 15 21 H 0.08 1.33 8.09 -51.93 -0.42 0.91 15 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 23 H 0.07 1.33 7.73 -51.93 -0.40 0.93 15 24 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.11 2.40 6.03 -51.93 -0.31 2.09 15 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 27 H 0.35 5.32 9.12 45.56 0.42 5.73 15 LS Contribution 231.30 15.07 3.49 3.49 Total: -1.00 -30.65 231.30 -3.66 -34.31 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -2.15 Total: 4.66 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.38 Total: 0.55 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 1.23 Total: -47.08 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.38 Total: -10.83 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.47 Total: 14.90 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.65 -3.66 -34.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.844 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds