Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46965 * 124.89508 * 3 2 1 5 5 C 1.36932 * 120.00000 * 92.41978 * 4 3 2 6 6 H 1.08001 * 120.00076 * 225.90391 * 5 4 3 7 7 C 1.38810 * 119.99884 * 45.90398 * 5 4 3 8 8 N 1.31628 * 120.00045 * 212.59600 * 7 5 4 9 9 Si 1.86797 * 120.00319 * 32.59426 * 7 5 4 10 10 H 1.48498 * 109.47237 * 91.62465 * 9 7 5 11 11 H 1.48500 * 109.47195 * 211.62518 * 9 7 5 12 12 H 1.48507 * 109.47006 * 331.62402 * 9 7 5 13 13 C 1.46503 * 120.00120 * 272.41893 * 4 3 2 14 14 H 1.08999 * 112.84751 * 13.11812 * 13 4 3 15 15 C 1.53779 * 113.61624 * 241.92251 * 13 4 3 16 16 C 1.53781 * 87.07800 * 270.88515 * 15 13 4 17 17 C 1.53770 * 113.61438 * 144.42063 * 13 4 3 18 18 H 1.09003 * 113.61591 * 203.66434 * 17 13 4 19 19 O 1.42905 * 113.61928 * 334.57010 * 17 13 4 20 20 H 1.09001 * 109.47341 * 244.88973 * 3 2 1 21 21 H 1.09005 * 109.47383 * 4.89895 * 3 2 1 22 22 H 0.96993 * 119.99908 * 180.02562 * 8 7 5 23 23 H 1.09000 * 113.61323 * 25.42716 * 15 13 4 24 24 H 1.08993 * 113.61345 * 156.33192 * 15 13 4 25 25 H 1.09000 * 113.62103 * 89.11813 * 16 15 13 26 26 H 1.09002 * 113.61189 * 219.93416 * 16 15 13 27 27 H 0.96691 * 114.00269 * 180.02562 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7911 -1.1329 5 6 3.3708 2.1227 -0.9709 6 1 3.0213 2.8389 -1.6999 7 6 4.0986 2.5522 0.1303 8 7 3.8545 3.7316 0.6613 9 14 5.4246 1.4564 0.8587 10 1 6.7307 1.7733 0.2272 11 1 5.5123 1.6917 2.3223 12 1 5.0847 0.0331 0.6056 13 6 3.2899 0.1568 -2.4392 14 1 2.8297 -0.8292 -2.5034 15 6 4.7470 0.1896 -2.9297 16 6 4.4158 1.5446 -3.5772 17 6 2.9523 1.0746 -3.6259 18 1 2.6974 0.5340 -4.5374 19 8 2.0106 2.1009 -3.3061 20 1 2.9712 0.4369 0.9305 21 1 2.9719 -1.0231 -0.0878 22 1 4.3633 4.0318 1.4306 23 1 5.4776 0.2580 -2.1237 24 1 4.9827 -0.5930 -3.6508 25 1 4.5793 2.3960 -2.9166 26 1 4.8652 1.6799 -4.5610 27 1 1.7940 2.6812 -4.0486 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132196.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = 10.730934 kcal Electronic energy + Delta-G solvation = -12809.982398 eV Core-core repulsion = 10569.150804 eV Total energy + Delta-G solvation = -2240.831594 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.40130 -37.57041 -36.11797 -34.98381 -33.33875 -28.63573 -26.99960 -25.29766 -23.57588 -20.01676 -19.75150 -18.20731 -17.67756 -16.83442 -16.07115 -15.82645 -15.03336 -14.74322 -14.64914 -14.09605 -13.84368 -13.50576 -13.19246 -12.81633 -12.60765 -12.39447 -12.30664 -11.88522 -11.70139 -11.34313 -10.84824 -10.46703 -10.27735 -8.60465 -8.10390 -5.50556 1.46240 1.56871 1.64611 1.89510 2.03647 2.56143 3.10841 3.39872 3.48226 3.75461 4.13325 4.15196 4.35182 4.41967 4.61882 4.81170 4.84311 4.95785 5.11547 5.36320 5.54792 5.80006 6.04956 6.68706 6.83903 7.02369 7.27796 7.71581 8.14984 9.06264 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.025487 B = 0.020493 C = 0.015469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.354196 B = 1365.993909 C = 1809.663653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C 0.222 3.778 3 C 0.223 3.777 4 N -0.569 5.569 5 C -0.251 4.251 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.932 5.932 9 Si 0.903 3.097 10 H -0.296 1.296 11 H -0.306 1.306 12 H -0.219 1.219 13 C 0.146 3.854 14 H 0.094 0.906 15 C -0.148 4.148 16 C -0.163 4.163 17 C 0.060 3.940 18 H 0.099 0.901 19 O -0.561 6.561 20 H 0.089 0.911 21 H 0.136 0.864 22 H 0.261 0.739 23 H 0.054 0.946 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -9.633 -7.424 12.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.097 4.097 3 C 0.093 3.907 4 N -0.289 5.289 5 C -0.380 4.380 6 H 0.083 0.917 7 C -0.205 4.205 8 N -0.573 5.573 9 Si 0.728 3.272 10 H -0.223 1.223 11 H -0.234 1.234 12 H -0.141 1.141 13 C 0.039 3.961 14 H 0.112 0.888 15 C -0.188 4.188 16 C -0.201 4.201 17 C 0.000 4.000 18 H 0.117 0.883 19 O -0.366 6.366 20 H 0.106 0.894 21 H 0.153 0.847 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.536 -9.805 -6.716 12.152 hybrid contribution 1.045 0.752 0.092 1.290 sum 3.581 -9.053 -6.624 11.775 Atomic orbital electron populations 1.80958 1.15424 1.12038 1.11146 1.31818 0.97231 0.90037 0.90603 1.19503 0.78158 0.99543 0.93481 1.43677 1.71793 1.07279 1.06109 1.18833 1.27998 0.82672 1.08516 0.91702 1.26281 0.99754 0.96391 0.98025 1.70195 1.40016 1.24465 1.22661 0.86335 0.81657 0.83374 0.75788 1.22343 1.23402 1.14073 1.22025 0.95002 0.94670 0.84369 0.88764 1.23209 0.97678 0.97506 1.00377 1.23499 0.97394 0.98958 1.00202 1.24092 0.87457 0.89951 0.98479 0.88300 1.86893 1.64005 1.45819 1.39837 0.89365 0.84680 0.93038 0.92671 0.87239 0.91410 0.91347 0.78485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -23.26 18.54 20.00 0.37 -22.89 15 2 C 0.22 9.13 15.77 89.44 1.41 10.54 15 3 C 0.22 8.13 4.64 84.57 0.39 8.52 15 4 N -0.57 -23.55 1.94 -685.58 -1.33 -24.88 15 5 C -0.25 -12.84 6.75 84.03 0.57 -12.27 15 6 H 0.07 3.81 5.28 -2.91 -0.02 3.80 15 7 C -0.01 -0.34 4.98 84.86 0.42 0.08 15 8 N -0.93 -55.68 13.97 21.65 0.30 -55.37 15 9 Si 0.90 39.85 26.29 68.60 1.80 41.65 15 10 H -0.30 -13.45 7.11 99.48 0.71 -12.74 15 11 H -0.31 -14.06 7.11 99.48 0.71 -13.35 15 12 H -0.22 -8.03 6.22 99.48 0.62 -7.41 15 13 C 0.15 4.85 4.59 45.51 0.21 5.06 15 14 H 0.09 2.59 8.08 -2.39 -0.02 2.57 15 15 C -0.15 -4.35 7.74 31.12 0.24 -4.10 15 16 C -0.16 -5.34 7.35 31.12 0.23 -5.12 15 17 C 0.06 1.94 5.03 31.12 0.16 2.09 15 18 H 0.10 2.44 8.14 -2.39 -0.02 2.42 15 19 O -0.56 -21.99 10.76 -148.98 -1.60 -23.59 15 20 H 0.09 3.42 5.45 -2.39 -0.01 3.41 15 21 H 0.14 3.57 8.09 -2.38 -0.02 3.55 15 22 H 0.26 14.85 8.31 -92.71 -0.77 14.08 15 23 H 0.05 1.82 7.73 -2.39 -0.02 1.81 15 24 H 0.11 2.34 8.14 -2.39 -0.02 2.32 15 25 H 0.07 2.89 6.03 -2.39 -0.01 2.87 15 26 H 0.07 1.85 8.14 -2.39 -0.02 1.84 15 27 H 0.37 11.03 9.12 -74.06 -0.68 10.36 15 Total: -1.00 -68.37 231.30 3.60 -64.77 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.43 Total: 15.51 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 3.63 Total: 4.81 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -0.66 Total: -103.15 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.60 Total: -23.59 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.80 Total: 41.65 kcal Total: -68.37 3.60 -64.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132196.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.503 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds