Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46658 * 124.21711 * 3 2 1 5 5 C 1.36933 * 119.99948 * 263.97036 * 4 3 2 6 6 H 1.08004 * 120.00510 * 199.03156 * 5 4 3 7 7 C 1.38818 * 119.99830 * 19.02879 * 5 4 3 8 8 N 1.31620 * 120.00096 * 22.34970 * 7 5 4 9 9 Si 1.86804 * 119.99967 * 202.35154 * 7 5 4 10 10 H 1.48504 * 109.47015 * 59.99854 * 9 7 5 11 11 H 1.48500 * 109.47272 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46973 * 300.00020 * 9 7 5 13 13 C 1.46497 * 120.00290 * 83.97257 * 4 3 2 14 14 H 1.09009 * 112.90805 * 11.25011 * 13 4 3 15 15 C 1.53780 * 113.61438 * 142.50003 * 13 4 3 16 16 C 1.53788 * 87.08065 * 139.98319 * 15 13 4 17 17 C 1.53776 * 87.07877 * 334.56766 * 16 15 13 18 18 H 1.09003 * 113.61755 * 270.80292 * 17 16 15 19 19 O 1.42901 * 113.61361 * 139.98265 * 17 16 15 20 20 H 1.08995 * 109.47513 * 4.21656 * 3 2 1 21 21 H 1.09001 * 109.46926 * 244.21152 * 3 2 1 22 22 H 0.96998 * 119.99597 * 179.97438 * 8 7 5 23 23 H 1.08998 * 113.61597 * 25.43247 * 15 13 4 24 24 H 1.09004 * 113.61398 * 254.53115 * 15 13 4 25 25 H 1.08996 * 113.61327 * 220.01829 * 16 15 13 26 26 H 1.08997 * 113.69015 * 89.12342 * 16 15 13 27 27 H 0.96697 * 114.00092 * 79.50502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7776 -1.1422 5 6 3.4418 0.1422 -2.3048 6 1 4.0752 0.6397 -3.0244 7 6 2.9783 -1.1414 -2.5586 8 7 1.8973 -1.5829 -1.9512 9 14 3.8887 -2.2422 -3.7624 10 1 5.2802 -2.4506 -3.2875 11 1 3.1966 -3.5528 -3.8556 12 1 3.9134 -1.5986 -5.1004 13 6 3.2137 2.2343 -1.0406 14 1 3.0986 2.5991 -0.0198 15 6 4.4455 2.8046 -1.7633 16 6 3.5428 3.9620 -2.2221 17 6 2.3574 2.9948 -2.0668 18 1 2.1411 2.4208 -2.9679 19 8 1.1931 3.6021 -1.5030 20 1 2.9718 -1.0240 -0.0756 21 1 2.9711 0.4479 0.9253 22 1 1.5733 -2.4798 -2.1288 23 1 4.8012 2.1776 -2.5809 24 1 5.2434 3.1143 -1.0882 25 1 3.7207 4.2728 -3.2515 26 1 3.5168 4.7998 -1.5253 27 1 0.6749 4.1199 -2.1341 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704132197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = 24.128171 kcal Electronic energy + Delta-G solvation = -12626.908013 eV Core-core repulsion = 10386.657367 eV Total energy + Delta-G solvation = -2240.250647 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.76946 -35.69887 -34.41145 -33.40695 -30.88584 -26.95861 -25.05434 -23.96613 -21.86949 -19.12471 -17.24019 -16.71346 -15.89752 -15.50009 -14.25266 -14.08833 -13.48842 -13.11678 -12.65474 -12.00368 -11.87609 -11.28471 -11.13768 -11.09496 -10.91064 -10.83278 -10.54049 -10.37788 -10.13639 -9.80923 -9.42847 -9.13019 -8.68253 -7.14839 -5.97991 -3.37251 3.31292 3.39054 3.39888 4.17964 4.42995 4.55546 4.87931 5.16733 5.26462 5.35895 5.55929 5.67784 5.71849 5.91158 6.15297 6.20604 6.40381 6.47646 6.64000 6.85538 6.98971 7.01273 7.65593 8.14798 8.28074 8.95955 9.30532 9.61873 10.07866 11.10030 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.016131 C = 0.012189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.579639 B = 1735.369167 C = 2296.661385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.249 3.751 3 C 0.257 3.743 4 N -0.566 5.566 5 C -0.272 4.272 6 H 0.083 0.917 7 C 0.007 3.993 8 N -0.895 5.895 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.166 3.834 14 H 0.085 0.915 15 C -0.146 4.146 16 C -0.175 4.175 17 C 0.054 3.946 18 H 0.084 0.916 19 O -0.562 6.562 20 H 0.109 0.891 21 H 0.059 0.941 22 H 0.260 0.740 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.872 6.704 0.567 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.070 4.070 3 C 0.128 3.872 4 N -0.284 5.284 5 C -0.400 4.400 6 H 0.101 0.899 7 C -0.192 4.192 8 N -0.538 5.538 9 Si 0.736 3.264 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.057 3.943 14 H 0.103 0.897 15 C -0.185 4.185 16 C -0.213 4.213 17 C -0.007 4.007 18 H 0.102 0.898 19 O -0.366 6.366 20 H 0.127 0.873 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.353 6.187 1.098 7.644 hybrid contribution 0.465 -0.389 -1.503 1.621 sum 4.817 5.798 -0.406 7.549 Atomic orbital electron populations 1.80775 1.14490 1.11532 1.11722 1.30364 0.96271 0.90381 0.90008 1.18273 0.80635 0.99210 0.89115 1.44109 1.72983 0.99812 1.11542 1.19154 1.25130 0.97494 0.98226 0.89945 1.24953 0.95872 0.99358 0.99053 1.69939 1.19660 1.18364 1.45802 0.86308 0.79552 0.79977 0.80601 1.20700 1.21669 1.20950 1.22016 0.92267 0.83447 0.96572 0.89657 1.23139 0.97049 0.96783 1.01515 1.23481 0.99390 0.97746 1.00723 1.24542 0.82829 0.93530 0.99807 0.89769 1.86555 1.39991 1.69869 1.40148 0.87348 0.92275 0.92918 0.88853 0.91849 0.92223 0.90462 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -13.60 18.54 42.15 0.78 -12.81 15 2 C 0.25 6.22 13.60 -20.76 -0.28 5.94 15 3 C 0.26 5.65 5.43 -6.83 -0.04 5.62 15 4 N -0.57 -12.85 2.73 -168.04 -0.46 -13.31 15 5 C -0.27 -6.65 8.56 -15.06 -0.13 -6.78 15 6 H 0.08 1.95 5.99 -52.48 -0.31 1.63 15 7 C 0.01 0.19 4.82 -17.43 -0.08 0.10 15 8 N -0.90 -24.56 9.60 55.49 0.53 -24.03 15 9 Si 0.91 20.38 29.61 -169.99 -5.03 15.35 15 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 13 C 0.17 3.26 4.23 -67.12 -0.28 2.97 15 14 H 0.09 1.60 8.04 -51.92 -0.42 1.19 15 15 C -0.15 -2.42 7.53 -25.92 -0.20 -2.62 15 16 C -0.17 -2.71 7.91 -25.92 -0.21 -2.91 15 17 C 0.05 1.04 4.81 -25.92 -0.12 0.92 15 18 H 0.08 1.82 7.66 -51.93 -0.40 1.42 15 19 O -0.56 -10.82 13.67 -35.23 -0.48 -11.30 15 20 H 0.11 2.49 6.57 -51.93 -0.34 2.15 15 21 H 0.06 1.07 8.07 -51.93 -0.42 0.65 15 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 23 H 0.09 1.66 6.00 -51.93 -0.31 1.35 15 24 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.36 5.29 9.12 45.56 0.42 5.70 15 LS Contribution 236.52 15.07 3.56 3.56 Total: -1.00 -30.29 236.52 -4.62 -34.91 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -2.19 Total: 4.38 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.34 Total: 3.24 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.86 Total: -50.15 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.48 Total: -11.30 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.29 -4.62 -34.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.043 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds