Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46658 * 124.21711 * 3 2 1 5 5 C 1.36933 * 119.99948 * 263.97036 * 4 3 2 6 6 H 1.08004 * 120.00510 * 199.03156 * 5 4 3 7 7 C 1.38818 * 119.99830 * 19.02879 * 5 4 3 8 8 N 1.31620 * 120.00096 * 22.34970 * 7 5 4 9 9 Si 1.86804 * 119.99967 * 202.35154 * 7 5 4 10 10 H 1.48504 * 109.47015 * 59.99854 * 9 7 5 11 11 H 1.48500 * 109.47272 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46973 * 300.00020 * 9 7 5 13 13 C 1.46497 * 120.00290 * 83.97257 * 4 3 2 14 14 H 1.09009 * 112.90805 * 11.25011 * 13 4 3 15 15 C 1.53780 * 113.61438 * 142.50003 * 13 4 3 16 16 C 1.53788 * 87.08065 * 139.98319 * 15 13 4 17 17 C 1.53776 * 87.07877 * 334.56766 * 16 15 13 18 18 H 1.09003 * 113.61755 * 270.80292 * 17 16 15 19 19 O 1.42901 * 113.61361 * 139.98265 * 17 16 15 20 20 H 1.08995 * 109.47513 * 4.21656 * 3 2 1 21 21 H 1.09001 * 109.46926 * 244.21152 * 3 2 1 22 22 H 0.96998 * 119.99597 * 179.97438 * 8 7 5 23 23 H 1.08998 * 113.61597 * 25.43247 * 15 13 4 24 24 H 1.09004 * 113.61398 * 254.53115 * 15 13 4 25 25 H 1.08996 * 113.61327 * 220.01829 * 16 15 13 26 26 H 1.08997 * 113.69015 * 89.12342 * 16 15 13 27 27 H 0.96697 * 114.00092 * 79.50502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 0.7776 -1.1422 5 6 3.4418 0.1422 -2.3048 6 1 4.0752 0.6397 -3.0244 7 6 2.9783 -1.1414 -2.5586 8 7 1.8973 -1.5829 -1.9512 9 14 3.8887 -2.2422 -3.7624 10 1 5.2802 -2.4506 -3.2875 11 1 3.1966 -3.5528 -3.8556 12 1 3.9134 -1.5986 -5.1004 13 6 3.2137 2.2343 -1.0406 14 1 3.0986 2.5991 -0.0198 15 6 4.4455 2.8046 -1.7633 16 6 3.5428 3.9620 -2.2221 17 6 2.3574 2.9948 -2.0668 18 1 2.1411 2.4208 -2.9679 19 8 1.1931 3.6021 -1.5030 20 1 2.9718 -1.0240 -0.0756 21 1 2.9711 0.4479 0.9253 22 1 1.5733 -2.4798 -2.1288 23 1 4.8012 2.1776 -2.5809 24 1 5.2434 3.1143 -1.0882 25 1 3.7207 4.2728 -3.2515 26 1 3.5168 4.7998 -1.5253 27 1 0.6749 4.1199 -2.1341 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704132197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = 2.425676 kcal Electronic energy + Delta-G solvation = -12627.849104 eV Core-core repulsion = 10386.657367 eV Total energy + Delta-G solvation = -2241.191737 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.25745 -37.48615 -36.17245 -35.09725 -32.72782 -28.75725 -26.71584 -25.38027 -23.51682 -20.68653 -18.91263 -18.34955 -17.62529 -17.25259 -15.90035 -15.68473 -15.24885 -14.70151 -14.22798 -13.73978 -13.66706 -13.12206 -12.96612 -12.62289 -12.53752 -12.45877 -12.16571 -12.10024 -11.93113 -11.54757 -10.94331 -10.62261 -10.49621 -8.98222 -7.91698 -5.30367 1.52779 1.56672 1.62237 2.30874 2.53225 2.63074 3.26037 3.46631 3.82693 3.85044 3.99074 4.07792 4.28561 4.37467 4.82344 4.90959 4.93091 5.05440 5.22009 5.23668 5.45181 5.61165 5.74845 6.28032 6.97567 7.06926 7.36085 7.79052 8.21104 9.14810 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030675 B = 0.016131 C = 0.012189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.579639 B = 1735.369167 C = 2296.661385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C 0.260 3.740 3 C 0.254 3.746 4 N -0.578 5.578 5 C -0.260 4.260 6 H 0.091 0.909 7 C -0.045 4.045 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.270 1.270 11 H -0.306 1.306 12 H -0.283 1.283 13 C 0.148 3.852 14 H 0.096 0.904 15 C -0.134 4.134 16 C -0.150 4.150 17 C 0.045 3.955 18 H 0.051 0.949 19 O -0.580 6.580 20 H 0.097 0.903 21 H 0.106 0.894 22 H 0.248 0.752 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 8.200 0.555 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C -0.058 4.058 3 C 0.124 3.876 4 N -0.296 5.296 5 C -0.389 4.389 6 H 0.109 0.891 7 C -0.240 4.240 8 N -0.575 5.575 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.233 1.233 12 H -0.209 1.209 13 C 0.040 3.960 14 H 0.114 0.886 15 C -0.173 4.173 16 C -0.188 4.188 17 C -0.016 4.016 18 H 0.069 0.931 19 O -0.387 6.387 20 H 0.115 0.885 21 H 0.123 0.877 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.167 7.731 1.073 9.948 hybrid contribution -0.102 -0.756 -1.495 1.678 sum 6.065 6.975 -0.422 9.253 Atomic orbital electron populations 1.80758 1.15941 1.13081 1.13315 1.31142 0.96995 0.89034 0.88661 1.18582 0.78764 0.99266 0.90959 1.44357 1.72661 1.01383 1.11189 1.19494 1.23656 0.97228 0.98514 0.89108 1.25581 0.96608 1.00759 1.01080 1.70090 1.21459 1.17869 1.48121 0.85376 0.78689 0.77633 0.78886 1.19536 1.23333 1.20868 1.22448 0.94153 0.81727 0.97677 0.88571 1.23036 0.96694 0.96489 1.01073 1.23350 0.95936 0.97221 1.02292 1.24466 0.83981 0.94928 0.98252 0.93060 1.86500 1.40630 1.70281 1.41293 0.88482 0.87684 0.94221 0.90112 0.89144 0.90579 0.88526 0.77218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -29.92 18.54 20.01 0.37 -29.55 15 2 C 0.26 12.99 13.60 89.44 1.22 14.20 15 3 C 0.25 10.87 5.43 84.57 0.46 11.33 15 4 N -0.58 -25.37 2.73 -685.56 -1.87 -27.24 15 5 C -0.26 -12.45 8.56 84.04 0.72 -11.73 15 6 H 0.09 4.15 5.99 -2.91 -0.02 4.13 15 7 C -0.04 -2.28 4.82 84.86 0.41 -1.87 15 8 N -0.93 -51.77 9.60 21.65 0.21 -51.56 15 9 Si 0.97 41.96 29.61 68.60 2.03 43.99 15 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 11 H -0.31 -14.00 7.11 99.48 0.71 -13.29 15 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 15 13 C 0.15 5.43 4.23 45.52 0.19 5.62 15 14 H 0.10 3.32 8.04 -2.38 -0.02 3.30 15 15 C -0.13 -3.98 7.53 31.12 0.23 -3.74 15 16 C -0.15 -4.08 7.91 31.12 0.25 -3.83 15 17 C 0.04 1.65 4.81 31.12 0.15 1.80 15 18 H 0.05 2.20 7.66 -2.39 -0.02 2.18 15 19 O -0.58 -21.45 13.67 -148.98 -2.04 -23.49 15 20 H 0.10 4.42 6.57 -2.39 -0.02 4.41 15 21 H 0.11 3.50 8.07 -2.39 -0.02 3.48 15 22 H 0.25 13.97 8.31 -92.71 -0.77 13.20 15 23 H 0.08 2.62 6.00 -2.39 -0.01 2.61 15 24 H 0.09 2.22 8.14 -2.38 -0.02 2.20 15 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.10 2.32 8.14 -2.39 -0.02 2.30 15 27 H 0.38 10.56 9.12 -74.06 -0.68 9.89 15 Total: -1.00 -64.48 236.52 2.84 -61.64 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.51 Total: 14.43 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 3.63 Total: 11.78 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -1.29 Total: -108.36 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -2.04 Total: -23.49 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -64.48 2.84 -61.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704132197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.067 kcal (2) G-P(sol) polarization free energy of solvation -64.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds