Wall clock time and date at job start Mon Mar 30 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00283 * 2 1 4 4 H 1.48500 * 109.46962 * 269.99817 * 3 2 1 5 5 H 1.48504 * 109.47173 * 29.99413 * 3 2 1 6 6 H 1.48500 * 109.47369 * 149.99939 * 3 2 1 7 7 C 1.37876 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47222 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47034 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46841 * 179.97438 * 11 10 9 13 13 N 1.40291 * 126.83924 * 269.99382 * 12 11 10 14 14 N 1.28741 * 108.18963 * 179.72918 * 13 12 11 15 15 C 1.33294 * 109.98472 * 0.45056 * 14 13 12 16 16 C 1.35869 * 108.85756 * 359.54228 * 15 14 13 17 17 N 1.39273 * 126.67994 * 180.26372 * 16 15 14 18 18 H 0.97002 * 119.99759 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46570 * 60.00468 * 9 7 2 20 20 H 1.09001 * 109.47320 * 300.00561 * 9 7 2 21 21 H 1.09000 * 109.47297 * 59.99980 * 10 9 7 22 22 H 1.09003 * 109.46911 * 300.00328 * 10 9 7 23 23 H 1.09000 * 109.47089 * 60.00239 * 11 10 9 24 24 H 1.09003 * 109.47115 * 299.99683 * 11 10 9 25 25 H 1.08002 * 125.57504 * 179.81471 * 15 14 13 26 26 H 0.96998 * 119.99846 * 0.02711 * 17 16 15 27 27 H 0.97002 * 120.00063 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6528 0.6999 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4801 -4.9871 0.0033 12 7 2.4322 -6.1006 0.0037 13 7 2.9786 -6.7405 -1.1189 14 7 3.7757 -7.6637 -0.7069 15 6 3.7916 -7.6906 0.6257 16 6 2.9631 -6.7211 1.0944 17 7 2.7063 -6.4202 2.4298 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5574 -0.8881 20 1 0.6245 -2.5563 0.8919 21 1 2.8719 -3.6036 0.8927 22 1 2.8719 -3.6051 -0.8873 23 1 0.8538 -5.0453 -0.8869 24 1 0.8532 -5.0443 0.8931 25 1 4.3719 -8.3690 1.2336 26 1 3.1406 -6.9273 3.1333 27 1 2.0932 -5.7034 2.6562 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713466160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:20 Heat of formation + Delta-G solvation = 79.417341 kcal Electronic energy + Delta-G solvation = -11843.344740 eV Core-core repulsion = 9637.784363 eV Total energy + Delta-G solvation = -2205.560377 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.56988 -35.73135 -34.62491 -33.00747 -30.95139 -28.67600 -27.09480 -23.92325 -21.79391 -21.18824 -20.39267 -17.44480 -16.58656 -16.27050 -15.65652 -15.31336 -14.53907 -14.31531 -13.51391 -12.64180 -12.23345 -11.86058 -11.45825 -11.42369 -11.06721 -10.98677 -10.73369 -10.63385 -9.95678 -9.84003 -9.38657 -9.07248 -8.46230 -7.85599 -6.11241 -4.14291 1.85880 2.41258 2.94563 3.26462 3.32967 3.36178 3.70930 4.37943 4.80991 5.08001 5.25296 5.31818 5.47791 5.68444 5.79893 6.22203 6.34966 6.47283 6.65385 6.82613 7.29671 7.47631 7.49566 7.59046 7.86221 8.27550 8.63713 8.91496 9.50796 10.99966 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.064561 B = 0.006832 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.593219 B = 4097.117566 C = 4135.359093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.122 3.878 12 N -0.387 5.387 13 N -0.094 5.094 14 N -0.226 5.226 15 C -0.157 4.157 16 C 0.333 3.667 17 N -0.845 5.845 18 H 0.262 0.738 19 H 0.022 0.978 20 H 0.018 0.982 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.175 0.825 26 H 0.417 0.583 27 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -10.761 5.945 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.002 3.998 12 N -0.181 5.181 13 N -0.073 5.073 14 N -0.094 5.094 15 C -0.321 4.321 16 C 0.098 3.902 17 N -0.396 5.396 18 H 0.072 0.928 19 H 0.040 0.960 20 H 0.037 0.963 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.192 0.808 26 H 0.248 0.752 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.943 -10.681 4.288 11.880 hybrid contribution 0.191 1.273 1.615 2.065 sum 3.134 -9.409 5.903 11.541 Atomic orbital electron populations 1.69949 1.06060 1.26844 1.50484 1.25006 0.94873 0.99348 0.95062 0.86560 0.79801 0.83209 0.78261 1.20525 1.21140 1.19859 1.21157 0.93069 0.90757 1.51159 0.92626 1.19056 0.93687 0.90862 0.97632 1.22089 0.99904 0.92429 1.01807 1.22214 0.89783 0.83551 1.04302 1.50801 1.35651 1.27789 1.03886 1.82021 1.12855 1.07632 1.04771 1.74019 1.11846 1.12501 1.11063 1.22243 1.11191 1.07045 0.91602 1.18802 0.94938 0.93569 0.82933 1.41472 1.54301 1.42745 1.01124 0.92843 0.96009 0.96331 0.92859 0.91941 0.88154 0.89571 0.80769 0.75185 0.76470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.26 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 15 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 15 9 C 0.03 0.61 4.97 -27.88 -0.14 0.47 15 10 C -0.12 -2.42 5.48 -26.73 -0.15 -2.57 15 11 C 0.12 1.97 6.36 -4.04 -0.03 1.94 15 12 N -0.39 -6.40 3.69 -60.25 -0.22 -6.62 15 13 N -0.09 -1.77 13.81 60.35 0.83 -0.93 15 14 N -0.23 -3.99 12.32 30.25 0.37 -3.61 15 15 C -0.16 -2.25 11.90 -17.77 -0.21 -2.46 15 16 C 0.33 4.64 8.09 -152.54 -1.23 3.41 15 17 N -0.85 -8.09 9.11 31.25 0.28 -7.81 15 18 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 19 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 21 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.06 1.32 8.14 -51.93 -0.42 0.89 15 23 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 24 H 0.09 1.18 7.65 -51.93 -0.40 0.78 15 25 H 0.18 1.84 8.06 -52.49 -0.42 1.42 15 26 H 0.42 2.66 8.96 -40.82 -0.37 2.30 15 27 H 0.41 3.69 8.29 -40.82 -0.34 3.35 15 LS Contribution 244.14 15.07 3.68 3.68 Total: -1.00 -31.80 244.14 -4.68 -36.49 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.18 Total: 0.18 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -2.17 Total: -12.34 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 2.00 Total: -44.24 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.80 -4.68 -36.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713466160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.904 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds