Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.41381 * 128.00560 * 269.67720 * 14 13 12 16 16 N 1.30175 * 106.39567 * 179.89117 * 15 14 13 17 17 O 1.20916 * 111.60187 * 0.39639 * 16 15 14 18 18 C 1.34035 * 111.57410 * 359.73883 * 17 16 15 19 19 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 24 24 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 25 25 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 26 26 H 1.08007 * 126.80063 * 0.03842 * 15 14 13 27 27 H 1.07997 * 126.78321 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.8342 -1.2153 4.5296 16 7 2.6911 -1.7011 5.3806 17 8 3.8266 -1.4089 5.0849 18 6 3.8708 -0.6750 3.9642 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7088 1.1611 -3.4845 23 1 1.4496 -1.4978 1.4101 24 1 2.7588 1.0463 2.1182 25 1 1.0870 0.6164 2.5525 26 1 0.7600 -1.3232 4.5600 27 1 4.7542 -0.2832 3.4822 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718912578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = 59.561697 kcal Electronic energy + Delta-G solvation = -11978.614634 eV Core-core repulsion = 9739.900501 eV Total energy + Delta-G solvation = -2238.714134 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.71321 -36.44486 -34.00192 -32.37762 -31.38002 -28.56506 -25.30836 -24.77129 -22.61519 -20.98141 -20.24065 -17.71430 -17.30252 -16.34871 -14.92778 -14.61459 -14.49403 -13.56558 -13.38158 -12.67166 -12.18074 -11.85783 -11.73570 -11.13238 -10.92307 -10.79018 -10.53668 -10.18914 -10.16367 -9.92699 -9.21640 -9.03689 -8.39249 -7.32694 -6.01737 -4.05208 1.71677 2.46409 3.31401 3.37702 3.42033 3.46669 4.42060 4.50759 4.93755 5.19164 5.30079 5.44164 5.59460 5.83718 6.01652 6.20340 6.30167 6.63688 6.79100 7.03265 7.28392 7.69489 7.84017 8.21380 8.40938 8.45455 8.54915 9.01942 9.60379 11.05288 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066393 B = 0.007480 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.631221 B = 3742.624895 C = 3969.735831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.210 3.790 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.679 5.679 13 C 0.130 3.870 14 C -0.185 4.185 15 C -0.009 4.009 16 N -0.375 5.375 17 O 0.088 5.912 18 C -0.049 4.049 19 H 0.028 0.972 20 H 0.005 0.995 21 H 0.090 0.910 22 H 0.260 0.740 23 H 0.327 0.673 24 H 0.079 0.921 25 H 0.034 0.966 26 H 0.185 0.815 27 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -0.796 9.567 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.310 5.310 13 C 0.000 4.000 14 C -0.189 4.189 15 C -0.188 4.188 16 N -0.080 5.080 17 O 0.024 5.976 18 C -0.132 4.132 19 H 0.047 0.953 20 H 0.024 0.976 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.144 0.856 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.202 0.798 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.832 -1.333 10.366 10.828 hybrid contribution -0.957 0.176 -1.477 1.769 sum 1.875 -1.157 8.889 9.158 Atomic orbital electron populations 1.22443 1.00619 0.99291 1.00586 1.19213 0.89700 0.94488 0.86301 0.94701 1.21141 1.30289 1.12511 0.89522 0.91920 1.24952 0.95281 0.95215 0.99066 1.69881 1.37219 1.23232 1.23409 0.86492 0.78452 0.80036 0.82369 1.20731 1.19924 1.21411 1.60896 1.58342 1.08897 1.02819 1.20172 0.98728 0.94443 0.86612 1.21626 0.92803 1.04533 0.99960 1.25002 1.01832 0.99097 0.92858 1.73819 0.90294 1.20308 1.23557 1.84757 1.23887 1.52815 1.36147 1.25839 1.00586 0.97796 0.88939 0.95283 0.97576 0.89145 0.93027 0.85648 0.90314 0.94797 0.79755 0.76693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.94 37.16 0.33 -3.64 15 2 C 0.21 5.12 2.57 -68.87 -0.18 4.94 15 3 H 0.04 0.92 7.80 -51.92 -0.40 0.52 15 4 C -0.50 -13.48 8.84 -34.44 -0.30 -13.78 15 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 15 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 15 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 15 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 15 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 12 N -0.68 -13.89 6.22 -109.22 -0.68 -14.57 15 13 C 0.13 2.19 6.06 -4.98 -0.03 2.16 15 14 C -0.18 -2.74 5.84 -104.42 -0.61 -3.35 15 15 C -0.01 -0.13 12.16 -17.06 -0.21 -0.34 15 16 N -0.38 -5.75 12.07 30.35 0.37 -5.38 15 17 O 0.09 1.26 11.20 17.19 0.19 1.45 15 18 C -0.05 -0.65 12.26 29.74 0.36 -0.28 15 19 H 0.03 0.65 8.13 -51.93 -0.42 0.23 15 20 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 15 21 H 0.09 2.36 6.07 -51.93 -0.32 2.04 15 22 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 23 H 0.33 6.50 8.46 -39.30 -0.33 6.17 15 24 H 0.08 1.31 8.06 -51.93 -0.42 0.89 15 25 H 0.03 0.56 7.44 -51.93 -0.39 0.18 15 26 H 0.19 2.22 8.06 -52.48 -0.42 1.80 15 27 H 0.22 2.11 8.06 -52.49 -0.42 1.69 15 LS Contribution 239.29 15.07 3.61 3.61 Total: -1.00 -28.89 239.29 -4.69 -33.58 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -3.06 Total: 2.61 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -0.73 Total: -12.87 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.31 Total: -44.58 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -28.89 -4.69 -33.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718912578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.144 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds