Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.50697 * 109.47224 * 180.02562 * 13 12 2 15 15 C 1.41381 * 128.00560 * 269.67720 * 14 13 12 16 16 N 1.30175 * 106.39567 * 179.89117 * 15 14 13 17 17 O 1.20916 * 111.60187 * 0.39639 * 16 15 14 18 18 C 1.34035 * 111.57410 * 359.73883 * 17 16 15 19 19 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 21 21 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 22 22 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 23 23 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 24 24 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 25 25 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 26 26 H 1.08007 * 126.80063 * 0.03842 * 15 14 13 27 27 H 1.07997 * 126.78321 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5884 -0.5213 3.5558 15 6 1.8342 -1.2153 4.5296 16 7 2.6911 -1.7011 5.3806 17 8 3.8266 -1.4089 5.0849 18 6 3.8708 -0.6750 3.9642 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 0.7088 1.1611 -3.4845 23 1 1.4496 -1.4978 1.4101 24 1 2.7588 1.0463 2.1182 25 1 1.0870 0.6164 2.5525 26 1 0.7600 -1.3232 4.5600 27 1 4.7542 -0.2832 3.4822 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718912578.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = 40.034341 kcal Electronic energy + Delta-G solvation = -11979.461404 eV Core-core repulsion = 9739.900501 eV Total energy + Delta-G solvation = -2239.560903 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.83146 -38.07343 -35.48552 -34.00849 -32.71137 -30.23315 -27.24858 -26.32868 -23.74132 -22.22609 -22.08290 -18.88378 -18.43124 -18.24749 -16.77746 -16.13322 -15.84847 -15.22924 -14.84204 -14.12001 -13.63873 -13.54849 -13.33070 -12.86909 -12.67691 -12.58429 -12.16852 -12.03106 -11.85926 -11.25428 -11.04889 -10.46463 -10.34783 -8.97995 -8.08095 -6.18824 0.64026 1.32815 1.45086 1.46250 1.56482 2.42026 2.46675 3.20768 3.41083 3.74984 3.91815 4.17156 4.32541 4.68486 4.78376 4.82248 4.88825 4.98016 5.11984 5.15268 5.42629 5.71604 5.83266 6.28414 6.63888 6.79374 6.95293 7.32733 7.51185 8.97194 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066393 B = 0.007480 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.631221 B = 3742.624895 C = 3969.735831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.010 0.990 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.285 1.285 12 N -0.683 5.683 13 C 0.138 3.862 14 C -0.207 4.207 15 C -0.007 4.007 16 N -0.396 5.396 17 O 0.086 5.914 18 C -0.029 4.029 19 H 0.030 0.970 20 H 0.028 0.972 21 H 0.062 0.938 22 H 0.261 0.739 23 H 0.331 0.669 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.203 0.797 27 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.856 -1.233 9.890 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.106 3.894 3 H 0.028 0.972 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.211 1.211 12 N -0.313 5.313 13 C 0.008 3.992 14 C -0.212 4.212 15 C -0.186 4.186 16 N -0.102 5.102 17 O 0.024 5.976 18 C -0.111 4.111 19 H 0.049 0.951 20 H 0.047 0.953 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.147 0.853 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.220 0.780 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.355 -1.775 10.713 11.366 hybrid contribution -1.091 0.333 -1.524 1.904 sum 2.264 -1.442 9.189 9.573 Atomic orbital electron populations 1.22259 0.99990 0.99255 1.00287 1.18969 0.90073 0.93035 0.87274 0.97243 1.21445 1.30371 1.12460 0.91056 0.92809 1.25679 0.95465 0.95879 1.01789 1.70000 1.37972 1.24271 1.23972 0.85546 0.77952 0.79028 0.78998 1.20281 1.19539 1.21081 1.60741 1.58036 1.09413 1.03079 1.20059 0.99147 0.93960 0.86003 1.21441 0.93759 1.06045 0.99915 1.25326 1.02770 0.98242 0.92249 1.73825 0.90709 1.21342 1.24335 1.84752 1.23590 1.52855 1.36438 1.26416 1.01119 0.95785 0.87822 0.95069 0.95261 0.91959 0.93018 0.85251 0.90302 0.94398 0.77964 0.73622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.33 8.94 71.98 0.64 -6.68 15 2 C 0.21 10.41 2.57 44.17 0.11 10.52 15 3 H 0.01 0.51 7.80 -2.38 -0.02 0.49 15 4 C -0.51 -27.89 8.84 25.60 0.23 -27.67 15 5 H 0.05 2.94 7.81 -2.91 -0.02 2.92 15 6 C 0.01 0.55 5.30 84.66 0.45 1.00 15 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 15 8 Si 0.96 43.26 29.54 68.60 2.03 45.28 15 9 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 11 H -0.29 -12.63 7.11 99.48 0.71 -11.93 15 12 N -0.68 -27.17 6.22 -499.46 -3.11 -30.27 15 13 C 0.14 4.42 6.06 85.56 0.52 4.94 15 14 C -0.21 -5.72 5.84 -19.73 -0.12 -5.84 15 15 C -0.01 -0.19 12.16 85.71 1.04 0.85 15 16 N -0.40 -11.43 12.07 -59.28 -0.72 -12.15 15 17 O 0.09 2.26 11.20 71.69 0.80 3.06 15 18 C -0.03 -0.69 12.26 67.18 0.82 0.13 15 19 H 0.03 1.38 8.13 -2.39 -0.02 1.36 15 20 H 0.03 1.17 7.45 -2.39 -0.02 1.15 15 21 H 0.06 3.25 6.07 -2.39 -0.01 3.24 15 22 H 0.26 14.05 8.31 -92.71 -0.77 13.28 15 23 H 0.33 12.72 8.46 -89.70 -0.76 11.96 15 24 H 0.08 2.51 8.06 -2.39 -0.02 2.50 15 25 H 0.04 1.19 7.44 -2.39 -0.02 1.17 15 26 H 0.20 4.45 8.06 -2.91 -0.02 4.42 15 27 H 0.25 4.01 8.06 -2.91 -0.02 3.99 15 Total: -1.00 -60.22 239.29 3.37 -56.85 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.41 Total: 11.77 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 3.70 Total: -22.75 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -3.58 Total: -94.22 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.80 Total: 3.06 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -60.22 3.37 -56.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718912578.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.889 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds