Wall clock time and date at job start Mon Mar 30 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12397 * 1 3 3 N 1.12407 * 179.97438 * 2 1 4 4 C 1.46494 * 119.99597 * 178.86817 * 3 2 1 5 5 C 1.53004 * 109.47589 * 119.99991 * 4 3 2 6 6 H 1.09001 * 110.88025 * 305.69884 * 5 4 3 7 7 C 1.55153 * 111.00683 * 181.81950 * 5 4 3 8 8 C 1.54368 * 102.91894 * 206.45220 * 7 5 4 9 9 N 1.47022 * 107.28970 * 22.13562 * 8 7 5 10 10 C 1.36941 * 125.64916 * 181.12500 * 9 8 7 11 11 H 1.07999 * 119.99842 * 173.84828 * 10 9 8 12 12 C 1.38807 * 119.99964 * 353.85447 * 10 9 8 13 13 N 1.31619 * 120.00461 * 6.82613 * 12 10 9 14 14 Si 1.86801 * 120.00106 * 186.82526 * 12 10 9 15 15 H 1.48494 * 109.47254 * 94.98403 * 14 12 10 16 16 H 1.48497 * 109.47285 * 214.98537 * 14 12 10 17 17 H 1.48500 * 109.46768 * 334.98302 * 14 12 10 18 18 C 1.47428 * 108.70133 * 1.09487 * 9 8 7 19 19 H 1.09006 * 109.47127 * 239.99947 * 4 3 2 20 20 H 1.09000 * 109.47237 * 359.97438 * 4 3 2 21 21 H 1.09001 * 110.72018 * 324.78400 * 7 5 4 22 22 H 1.08996 * 110.72363 * 88.05783 * 7 5 4 23 23 H 1.09000 * 109.84776 * 262.72775 * 8 7 5 24 24 H 1.09003 * 110.03024 * 141.64753 * 8 7 5 25 25 H 0.96999 * 120.00949 * 180.02562 * 13 12 10 26 26 H 1.08998 * 110.36426 * 217.03328 * 18 9 8 27 27 H 1.08996 * 110.45661 * 94.75940 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9799 1.2693 -0.0251 5 6 3.8595 1.3756 1.2223 6 1 3.2683 1.2371 2.1276 7 6 4.6175 2.7290 1.2547 8 6 5.8725 2.4017 2.0919 9 7 6.0775 0.9475 2.0217 10 6 7.0754 0.2510 2.6497 11 1 7.0835 -0.8285 2.6170 12 6 8.0762 0.9324 3.3285 13 7 7.9956 2.2369 3.4839 14 14 9.5377 -0.0021 4.0216 15 1 10.6586 0.0397 3.0485 16 1 9.9663 0.6251 5.2976 17 1 9.1499 -1.4139 4.2698 18 6 5.0306 0.3634 1.1637 19 1 3.6065 1.3098 -0.9161 20 1 2.2711 2.0973 -0.0419 21 1 4.8962 3.0391 0.2476 22 1 4.0166 3.4960 1.7431 23 1 5.7160 2.7044 3.1272 24 1 6.7401 2.9186 1.6818 25 1 8.6952 2.7131 3.9579 26 1 4.7157 -0.6041 1.5549 27 1 5.3910 0.2589 0.1404 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885277489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:04 Heat of formation + Delta-G solvation = 125.926856 kcal Electronic energy + Delta-G solvation = -12074.961636 eV Core-core repulsion = 9871.418062 eV Total energy + Delta-G solvation = -2203.543573 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.102 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.58207 -37.82740 -36.07025 -32.91715 -30.31772 -28.67161 -25.95498 -24.04669 -20.35064 -19.97826 -18.69880 -17.90105 -17.57461 -16.78146 -15.49826 -15.00083 -14.56665 -13.80695 -13.24308 -12.33612 -11.98126 -11.88793 -11.61854 -10.89668 -10.79896 -10.69543 -10.15227 -10.03252 -9.91090 -9.78477 -9.63003 -8.80399 -8.56307 -6.80048 -5.70828 -3.02711 1.41234 2.48586 3.21719 3.41960 3.47330 3.49143 4.51612 4.89374 5.06851 5.23520 5.36222 5.50764 5.72508 5.82815 5.94687 5.99659 6.31005 6.45928 6.53228 6.77845 6.93461 7.56648 7.62716 7.83304 8.28079 9.24166 9.64587 9.84947 10.51293 11.41692 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.073774 B = 0.007802 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.446872 B = 3587.906833 C = 3861.750818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 N 0.278 4.722 3 N -0.367 5.367 4 C 0.086 3.914 5 C -0.105 4.105 6 H 0.077 0.923 7 C -0.137 4.137 8 C 0.177 3.823 9 N -0.609 5.609 10 C -0.227 4.227 11 H 0.079 0.921 12 C -0.009 4.009 13 N -0.922 5.922 14 Si 0.910 3.090 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.281 1.281 18 C 0.149 3.851 19 H 0.105 0.895 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.252 0.748 26 H 0.042 0.958 27 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 0.291 -6.248 10.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 N 0.280 4.720 3 N -0.283 5.283 4 C -0.042 4.042 5 C -0.126 4.126 6 H 0.095 0.905 7 C -0.176 4.176 8 C 0.052 3.948 9 N -0.335 5.335 10 C -0.355 4.355 11 H 0.096 0.904 12 C -0.205 4.205 13 N -0.570 5.570 14 Si 0.741 3.259 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.023 3.977 19 H 0.123 0.877 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.096 -0.161 -6.109 10.958 hybrid contribution 0.895 0.109 0.410 0.991 sum -8.200 -0.052 -5.699 9.986 Atomic orbital electron populations 1.87618 0.88910 0.99144 1.44708 1.41612 1.01882 1.16840 1.11647 1.70879 0.88067 1.25988 1.43365 1.22725 0.96212 0.83250 1.01982 1.22496 0.96332 0.98611 0.95194 0.90484 1.22931 0.98887 0.94850 1.00943 1.21158 0.91860 0.84795 0.97018 1.44515 1.30724 1.02985 1.55279 1.19090 0.99943 0.90434 1.26061 0.90366 1.24816 0.98839 0.95817 1.01015 1.69966 1.34121 1.06257 1.46634 0.86116 0.82998 0.78740 0.78059 1.21633 1.21830 1.20621 1.21478 0.87246 0.94669 0.94328 0.87733 0.92024 0.92063 0.92069 0.93982 0.93436 0.93805 0.93962 0.95961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.21 -2.71 20.57 60.35 1.24 -1.47 15 2 N 0.28 3.66 10.23 60.35 0.62 4.28 15 3 N -0.37 -5.07 11.20 -10.61 -0.12 -5.19 15 4 C 0.09 1.09 6.02 -4.04 -0.02 1.07 15 5 C -0.11 -1.73 3.27 -88.48 -0.29 -2.02 15 6 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 7 C -0.14 -2.37 6.42 -24.88 -0.16 -2.53 15 8 C 0.18 4.20 5.38 -3.04 -0.02 4.19 15 9 N -0.61 -15.55 3.39 -170.05 -0.58 -16.13 15 10 C -0.23 -6.38 10.26 -15.06 -0.15 -6.53 15 11 H 0.08 2.13 7.84 -52.49 -0.41 1.72 15 12 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 15 13 N -0.92 -27.11 10.36 55.49 0.57 -26.53 15 14 Si 0.91 22.20 29.56 -169.99 -5.02 17.18 15 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 18 C 0.15 3.04 6.60 -2.53 -0.02 3.03 15 19 H 0.10 1.21 8.03 -51.93 -0.42 0.79 15 20 H 0.06 0.66 8.04 -51.93 -0.42 0.25 15 21 H 0.06 0.95 8.04 -51.93 -0.42 0.53 15 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 23 H 0.04 1.11 7.55 -51.93 -0.39 0.72 15 24 H 0.05 1.25 7.36 -51.93 -0.38 0.87 15 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 15 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.02 0.45 7.95 -51.93 -0.41 0.04 15 LS Contribution 237.63 15.07 3.58 3.58 Total: -1.00 -29.76 237.63 -3.72 -33.48 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: -3.25 Total: -6.04 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.76 Total: -3.15 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 1.74 Total: -45.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.76 -3.72 -33.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885277489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.405 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds