Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.35033 * 126.39658 * 269.68945 * 3 2 1 5 5 N 1.30506 * 108.70119 * 179.82681 * 4 3 2 6 6 C 1.34132 * 109.24989 * 0.43879 * 5 4 3 7 7 C 1.50704 * 125.98778 * 179.72210 * 6 5 4 8 8 H 1.09000 * 109.46795 * 65.00240 * 7 6 5 9 9 O 1.42901 * 109.47095 * 185.00601 * 7 6 5 10 10 C 1.50704 * 109.47230 * 305.00597 * 7 6 5 11 11 H 1.07996 * 119.99891 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99834 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99910 * 179.97438 * 12 10 7 14 14 Si 1.86802 * 120.00051 * 0.02562 * 12 10 7 15 15 H 1.48504 * 109.47159 * 89.99746 * 14 12 10 16 16 H 1.48496 * 109.47215 * 209.99765 * 14 12 10 17 17 H 1.48504 * 109.47179 * 329.99914 * 14 12 10 18 18 C 1.34662 * 108.02472 * 359.72974 * 6 5 4 19 19 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 20 20 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 24 24 H 1.08006 * 125.65420 * 359.97438 * 4 3 2 25 25 H 0.96694 * 113.99864 * 59.99898 * 9 7 6 26 26 H 0.97002 * 119.99973 * 180.02562 * 13 12 10 27 27 H 1.07998 * 126.59488 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2910 2.1347 -1.0869 5 7 2.6999 3.3089 -0.6903 6 6 2.7120 3.3432 0.6506 7 6 3.1264 4.5151 1.5027 8 1 2.4301 5.3396 1.3499 9 8 3.1151 4.1309 2.8790 10 6 4.5154 4.9522 1.1145 11 1 5.0450 4.4336 0.3291 12 6 5.1097 6.0149 1.7615 13 7 6.3221 6.3960 1.4231 14 14 4.1935 6.9123 3.1196 15 1 4.4921 6.2714 4.4255 16 1 4.6268 8.3322 3.1545 17 1 2.7330 6.8468 2.8585 18 6 2.2891 2.1470 1.1019 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1857 1.8189 -2.1144 25 1 3.7130 3.4003 3.0883 26 1 6.7404 7.1434 1.8785 27 1 2.1833 1.8492 2.1346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953023397.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = 12.251925 kcal Electronic energy + Delta-G solvation = -12219.971990 eV Core-core repulsion = 9979.206350 eV Total energy + Delta-G solvation = -2240.765639 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.45516 -36.11605 -34.49303 -32.14831 -29.99562 -29.18959 -26.91849 -23.67361 -22.48384 -20.36712 -19.41492 -17.37625 -16.74169 -14.94248 -14.78700 -14.59896 -14.01087 -13.99746 -13.27089 -12.89304 -12.74731 -12.53302 -12.12652 -11.58224 -11.43451 -10.91714 -10.63584 -9.99886 -9.32902 -9.15348 -8.98317 -8.62191 -8.52667 -7.57977 -5.98846 -4.07599 2.61840 3.18860 3.53477 3.55565 3.68916 3.92248 4.60336 4.60888 4.90065 5.03992 5.11380 5.23865 5.36737 5.48576 5.57267 5.88979 5.89226 6.12516 6.37696 6.80787 7.27786 7.46767 7.65094 7.79134 8.43385 8.72938 9.01983 9.14502 9.63557 11.12091 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.068028 B = 0.009586 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.496114 B = 2920.349328 C = 3153.704592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.469 5.469 4 C 0.162 3.838 5 N -0.470 5.470 6 C 0.024 3.976 7 C 0.262 3.738 8 H 0.074 0.926 9 O -0.583 6.583 10 C -0.536 4.536 11 H 0.077 0.923 12 C 0.078 3.922 13 N -0.895 5.895 14 Si 0.912 3.088 15 H -0.279 1.279 16 H -0.305 1.305 17 H -0.268 1.268 18 C -0.075 4.075 19 H 0.061 0.939 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.195 0.805 25 H 0.362 0.638 26 H 0.264 0.736 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 -13.094 -1.173 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.156 5.156 4 C -0.120 4.120 5 N -0.190 5.190 6 C -0.106 4.106 7 C 0.204 3.796 8 H 0.091 0.909 9 O -0.388 6.388 10 C -0.574 4.574 11 H 0.095 0.905 12 C -0.126 4.126 13 N -0.533 5.533 14 Si 0.742 3.258 15 H -0.205 1.205 16 H -0.234 1.234 17 H -0.193 1.193 18 C -0.205 4.205 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.212 0.788 25 H 0.208 0.792 26 H 0.073 0.927 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.489 -11.984 -1.603 16.006 hybrid contribution -0.147 -0.761 0.989 1.256 sum -10.636 -12.744 -0.614 16.611 Atomic orbital electron populations 1.22160 0.94689 1.02515 1.03265 1.21689 0.95165 0.81000 1.03958 1.45476 1.50642 1.12219 1.07217 1.24942 1.05286 0.88473 0.93270 1.70207 1.17934 1.18512 1.12317 1.21935 1.01399 0.96463 0.90782 1.18228 0.97120 0.88033 0.76182 0.90853 1.86403 1.67391 1.55914 1.29110 1.21411 0.98675 1.16221 1.21052 0.90490 1.25039 0.94691 0.96139 0.96683 1.69963 1.14128 1.27477 1.41756 0.86280 0.80547 0.76734 0.82256 1.20526 1.23359 1.19295 1.22299 1.12247 0.93823 0.92137 0.91940 0.91072 0.91855 0.89457 0.89597 0.78813 0.79171 0.92682 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 15 2 C 0.11 1.03 6.87 -4.04 -0.03 1.00 15 3 N -0.47 -7.19 2.75 -118.57 -0.33 -7.52 15 4 C 0.16 2.79 12.56 -90.38 -1.14 1.66 15 5 N -0.47 -10.70 11.23 -10.87 -0.12 -10.82 15 6 C 0.02 0.54 6.25 -82.85 -0.52 0.02 15 7 C 0.26 6.72 2.86 -29.03 -0.08 6.64 15 8 H 0.07 1.98 7.20 -51.93 -0.37 1.61 15 9 O -0.58 -13.56 10.43 -35.23 -0.37 -13.93 15 10 C -0.54 -15.95 9.31 -34.44 -0.32 -16.27 15 11 H 0.08 2.54 7.98 -52.49 -0.42 2.12 15 12 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 13 N -0.90 -28.33 13.96 55.43 0.77 -27.56 15 14 Si 0.91 23.87 26.18 -169.99 -4.45 19.42 15 15 H -0.28 -7.18 7.11 56.52 0.40 -6.78 15 16 H -0.31 -7.92 7.11 56.52 0.40 -7.52 15 17 H -0.27 -6.95 6.54 56.52 0.37 -6.58 15 18 C -0.08 -1.38 10.75 -16.56 -0.18 -1.56 15 19 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.07 0.44 8.14 -51.93 -0.42 0.01 15 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.09 0.75 8.14 -51.93 -0.42 0.32 15 24 H 0.20 2.47 8.06 -52.48 -0.42 2.05 15 25 H 0.36 7.34 8.79 45.56 0.40 7.74 15 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 15 27 H 0.17 2.66 7.83 -52.49 -0.41 2.25 15 LS Contribution 238.50 15.07 3.59 3.59 Total: -1.00 -35.47 238.50 -5.38 -40.86 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.51 Total: 3.27 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.98 Total: -7.31 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.33 Total: -45.89 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.37 Total: -13.93 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -4.45 Total: 19.42 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -35.47 -5.38 -40.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953023397.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.111 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds