Wall clock time and date at job start Mon Mar 30 2020 02:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.35033 * 126.39658 * 269.68945 * 3 2 1 5 5 N 1.30506 * 108.70119 * 179.82681 * 4 3 2 6 6 C 1.34132 * 109.24989 * 0.43879 * 5 4 3 7 7 C 1.50704 * 125.98778 * 179.72210 * 6 5 4 8 8 H 1.09000 * 109.46795 * 65.00240 * 7 6 5 9 9 O 1.42901 * 109.47095 * 185.00601 * 7 6 5 10 10 C 1.50704 * 109.47230 * 305.00597 * 7 6 5 11 11 H 1.07996 * 119.99891 * 0.02562 * 10 7 6 12 12 C 1.37876 * 119.99834 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99910 * 179.97438 * 12 10 7 14 14 Si 1.86802 * 120.00051 * 0.02562 * 12 10 7 15 15 H 1.48504 * 109.47159 * 89.99746 * 14 12 10 16 16 H 1.48496 * 109.47215 * 209.99765 * 14 12 10 17 17 H 1.48504 * 109.47179 * 329.99914 * 14 12 10 18 18 C 1.34662 * 108.02472 * 359.72974 * 6 5 4 19 19 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 20 20 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 22 22 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 23 23 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 24 24 H 1.08006 * 125.65420 * 359.97438 * 4 3 2 25 25 H 0.96694 * 113.99864 * 59.99898 * 9 7 6 26 26 H 0.97002 * 119.99973 * 180.02562 * 13 12 10 27 27 H 1.07998 * 126.59488 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2910 2.1347 -1.0869 5 7 2.6999 3.3089 -0.6903 6 6 2.7120 3.3432 0.6506 7 6 3.1264 4.5151 1.5027 8 1 2.4301 5.3396 1.3499 9 8 3.1151 4.1309 2.8790 10 6 4.5154 4.9522 1.1145 11 1 5.0450 4.4336 0.3291 12 6 5.1097 6.0149 1.7615 13 7 6.3221 6.3960 1.4231 14 14 4.1935 6.9123 3.1196 15 1 4.4921 6.2714 4.4255 16 1 4.6268 8.3322 3.1545 17 1 2.7330 6.8468 2.8585 18 6 2.2891 2.1470 1.1019 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3635 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.1857 1.8189 -2.1144 25 1 3.7130 3.4003 3.0883 26 1 6.7404 7.1434 1.8785 27 1 2.1833 1.8492 2.1346 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953023397.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:07 Heat of formation + Delta-G solvation = -14.591022 kcal Electronic energy + Delta-G solvation = -12221.135987 eV Core-core repulsion = 9979.206350 eV Total energy + Delta-G solvation = -2241.929637 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.85148 -37.96252 -35.64268 -34.43187 -31.18704 -30.78977 -28.78099 -24.92090 -24.15547 -21.63341 -21.04433 -19.42655 -18.13166 -16.88562 -16.21826 -16.07739 -15.63432 -15.25602 -14.84728 -14.49536 -14.39301 -13.78058 -13.46208 -12.96335 -12.90492 -12.69028 -12.14972 -11.94700 -11.40432 -10.91263 -10.83310 -10.50383 -10.30887 -9.12253 -8.31531 -6.45007 1.25890 1.42438 1.46519 1.61190 2.06045 2.35993 2.41412 2.99700 3.75823 3.86940 4.07789 4.12640 4.19159 4.45492 4.51526 4.73565 4.86874 4.89320 5.25137 5.35067 5.45175 5.51059 5.88373 6.18173 6.50625 6.67206 7.07626 7.30800 7.44729 8.83864 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.068028 B = 0.009586 C = 0.008876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.496114 B = 2920.349328 C = 3153.704592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.458 5.458 4 C 0.172 3.828 5 N -0.535 5.535 6 C -0.032 4.032 7 C 0.275 3.725 8 H 0.053 0.947 9 O -0.576 6.576 10 C -0.540 4.540 11 H 0.027 0.973 12 C 0.024 3.976 13 N -0.942 5.942 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.300 1.300 17 H -0.265 1.265 18 C -0.051 4.051 19 H 0.056 0.944 20 H 0.101 0.899 21 H 0.048 0.952 22 H 0.115 0.885 23 H 0.103 0.897 24 H 0.237 0.763 25 H 0.376 0.624 26 H 0.268 0.732 27 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.112 -15.165 -0.412 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.142 5.142 4 C -0.110 4.110 5 N -0.255 5.255 6 C -0.161 4.161 7 C 0.216 3.784 8 H 0.070 0.930 9 O -0.383 6.383 10 C -0.578 4.578 11 H 0.046 0.954 12 C -0.175 4.175 13 N -0.582 5.582 14 Si 0.808 3.192 15 H -0.190 1.190 16 H -0.228 1.228 17 H -0.190 1.190 18 C -0.184 4.184 19 H 0.075 0.925 20 H 0.120 0.880 21 H 0.067 0.933 22 H 0.134 0.866 23 H 0.121 0.879 24 H 0.253 0.747 25 H 0.225 0.775 26 H 0.077 0.923 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.259 -14.108 -0.843 18.709 hybrid contribution 0.390 -0.275 0.653 0.809 sum -11.869 -14.383 -0.190 18.649 Atomic orbital electron populations 1.22130 0.93492 1.04198 1.02250 1.22180 0.96049 0.77859 1.06310 1.45775 1.48931 1.13866 1.05657 1.25604 1.03023 0.87171 0.95237 1.70046 1.20666 1.22032 1.12797 1.21578 1.05728 0.97539 0.91226 1.17700 0.93830 0.89280 0.77563 0.92951 1.86306 1.67703 1.56731 1.27551 1.21591 1.00606 1.15942 1.19652 0.95422 1.25917 0.95370 0.96955 0.99237 1.70089 1.15930 1.28549 1.43600 0.85195 0.79099 0.75578 0.79357 1.19043 1.22825 1.18963 1.22494 1.09529 0.92482 0.93871 0.92524 0.88037 0.93310 0.86633 0.87854 0.74730 0.77515 0.92281 0.78866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.24 71.98 0.74 -1.39 15 2 C 0.10 1.47 6.87 86.38 0.59 2.06 15 3 N -0.46 -12.72 2.75 -529.06 -1.46 -14.17 15 4 C 0.17 5.62 12.56 180.26 2.26 7.89 15 5 N -0.54 -24.58 11.23 -188.31 -2.11 -26.70 15 6 C -0.03 -1.48 6.25 41.39 0.26 -1.22 15 7 C 0.27 14.29 2.86 29.10 0.08 14.37 15 8 H 0.05 2.90 7.20 -2.39 -0.02 2.88 15 9 O -0.58 -26.15 10.43 -148.98 -1.55 -27.70 15 10 C -0.54 -33.34 9.31 25.60 0.24 -33.10 15 11 H 0.03 1.93 7.98 -2.91 -0.02 1.91 15 12 C 0.02 1.48 5.47 84.65 0.46 1.95 15 13 N -0.94 -61.35 13.96 21.45 0.30 -61.05 15 14 Si 0.98 49.70 26.18 68.60 1.80 51.49 15 15 H -0.27 -12.77 7.11 99.48 0.71 -12.06 15 16 H -0.30 -14.85 7.11 99.48 0.71 -14.15 15 17 H -0.26 -13.19 6.54 99.48 0.65 -12.54 15 18 C -0.05 -1.78 10.75 83.08 0.89 -0.88 15 19 H 0.06 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.10 0.76 8.14 -2.39 -0.02 0.74 15 21 H 0.05 0.79 8.14 -2.39 -0.02 0.78 15 22 H 0.12 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.24 5.26 8.06 -2.91 -0.02 5.23 15 25 H 0.38 14.72 8.79 -74.06 -0.65 14.07 15 26 H 0.27 16.21 8.31 -92.71 -0.77 15.44 15 27 H 0.19 5.53 7.83 -2.91 -0.02 5.51 15 Total: -1.00 -80.37 238.50 2.96 -77.41 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.46 Total: 11.05 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.53 Total: -10.33 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -3.27 Total: -101.92 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.55 Total: -27.70 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.80 Total: 51.49 kcal Total: -80.37 2.96 -77.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953023397.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.815 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds