Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28052 * 119.99718 * 2 1 4 4 N 1.40092 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.34784 * 119.99956 * 180.02562 * 4 3 2 6 6 O 1.21783 * 119.99901 * 359.97438 * 5 4 3 7 7 C 1.41741 * 119.99791 * 180.02562 * 5 4 3 8 8 H 1.08001 * 120.00619 * 359.97438 * 7 5 4 9 9 C 1.40181 * 119.99929 * 179.97438 * 7 5 4 10 10 N 1.30614 * 119.99701 * 359.97438 * 9 7 5 11 11 Si 1.86793 * 120.00145 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47232 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47146 * 120.00157 * 11 9 7 14 14 H 1.48498 * 109.47158 * 239.99867 * 11 9 7 15 15 C 1.50694 * 120.00128 * 179.97438 * 2 1 3 16 16 C 1.52995 * 117.50231 * 243.62472 * 15 2 1 17 17 C 1.52995 * 60.00032 * 252.50760 * 16 15 2 18 18 H 1.09001 * 109.46953 * 90.00305 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99903 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00534 * 1 2 3 21 21 H 0.97000 * 120.00520 * 0.02562 * 4 3 2 22 22 H 0.97000 * 120.00213 * 180.02562 * 10 9 7 23 23 H 1.09005 * 115.55100 * 29.33505 * 15 2 1 24 24 H 1.08995 * 117.50077 * 0.02562 * 16 15 2 25 25 H 1.09004 * 117.49772 * 145.01644 * 16 15 2 26 26 H 1.08995 * 117.50154 * 252.50193 * 17 16 15 27 27 H 1.09002 * 117.51350 * 107.47720 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1473 1.1090 0.0000 4 7 1.4468 2.3222 -0.0005 5 6 2.1207 3.4895 -0.0011 6 8 3.3385 3.4895 -0.0006 7 6 1.4119 4.7170 -0.0011 8 1 0.3319 4.7170 -0.0011 9 6 2.1127 5.9310 -0.0011 10 7 3.4189 5.9310 -0.0006 11 14 1.1787 7.5486 -0.0018 12 1 -0.2813 7.2773 -0.0017 13 1 1.5370 8.3276 1.2106 14 1 1.5379 8.3271 -1.2143 15 6 2.2606 -1.3050 0.0006 16 6 3.1359 -1.6149 1.2165 17 6 3.7846 -1.2410 -0.1177 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5137 21 1 0.4768 2.3223 -0.0005 22 1 3.9039 6.7710 -0.0002 23 1 1.7532 -2.1411 -0.4808 24 1 3.1665 -0.8750 2.0163 25 1 3.2044 -2.6550 1.5355 26 1 4.2800 -2.0349 -0.6765 27 1 4.2422 -0.2548 -0.1963 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084207983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = 22.909816 kcal Electronic energy + Delta-G solvation = -11943.572094 eV Core-core repulsion = 9703.268616 eV Total energy + Delta-G solvation = -2240.303478 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.31159 -36.96119 -34.82488 -32.59114 -30.84005 -28.21025 -26.26459 -23.15708 -22.00869 -20.28957 -18.46708 -17.28619 -15.58183 -15.49009 -15.13836 -14.16103 -13.78624 -13.60851 -12.74872 -12.57719 -12.26419 -11.54186 -11.25039 -11.21086 -11.13468 -10.80568 -10.59641 -10.30660 -10.15978 -9.92674 -9.17598 -8.94466 -7.68949 -7.36095 -6.33726 -4.87214 2.73949 3.07192 3.13693 3.18799 3.82327 4.14655 4.30163 4.51714 4.83007 5.21522 5.34048 5.49717 5.61293 5.73358 5.80872 5.88585 5.91406 6.07406 6.34201 6.52161 6.64055 6.97182 7.27059 7.90109 8.08099 8.82814 8.88207 9.40404 10.46380 10.73009 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.067357 B = 0.008134 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.594376 B = 3441.593365 C = 3772.331148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.044 3.956 3 N -0.205 5.205 4 N -0.598 5.598 5 C 0.561 3.439 6 O -0.554 6.554 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.088 3.912 10 N -0.750 5.750 11 Si 0.916 3.084 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.274 1.274 15 C -0.090 4.090 16 C -0.169 4.169 17 C -0.167 4.167 18 H 0.069 0.931 19 H 0.070 0.930 20 H 0.063 0.937 21 H 0.367 0.633 22 H 0.272 0.728 23 H 0.114 0.886 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 -9.534 0.395 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 N -0.013 5.013 4 N -0.345 5.345 5 C 0.368 3.632 6 O -0.433 6.433 7 C -0.577 4.577 8 H 0.088 0.912 9 C -0.134 4.134 10 N -0.377 5.377 11 Si 0.740 3.260 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.199 1.199 15 C -0.111 4.111 16 C -0.208 4.208 17 C -0.204 4.204 18 H 0.088 0.912 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.205 0.795 22 H 0.083 0.917 23 H 0.132 0.868 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.827 -8.815 0.388 9.617 hybrid contribution -1.895 0.541 -0.008 1.970 sum -5.722 -8.274 0.380 10.067 Atomic orbital electron populations 1.21106 0.93687 1.02774 1.02349 1.23590 0.92880 0.92624 1.05828 1.73909 1.27794 0.92705 1.06851 1.47954 1.07344 1.01736 1.77470 1.17034 0.87756 0.80494 0.77897 1.90653 1.13636 1.85472 1.53546 1.19977 0.94268 0.89534 1.53928 0.91198 1.25750 0.94657 1.00584 0.92442 1.70027 1.07300 1.27762 1.32645 0.86187 0.80429 0.80999 0.78432 1.18584 1.19902 1.19890 1.20569 0.92488 0.94293 1.03728 1.22971 1.04018 1.01649 0.92146 1.22983 0.94070 1.03930 0.99445 0.91234 0.91082 0.91853 0.79536 0.91662 0.86805 0.88763 0.88952 0.89086 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.51 36.01 0.34 -1.64 15 2 C 0.04 0.80 6.87 -78.89 -0.54 0.25 15 3 N -0.21 -4.76 10.01 35.61 0.36 -4.40 15 4 N -0.60 -14.88 6.08 29.13 0.18 -14.70 15 5 C 0.56 16.83 7.69 -14.92 -0.11 16.72 15 6 O -0.55 -18.97 15.22 5.11 0.08 -18.89 15 7 C -0.54 -15.36 9.31 -37.52 -0.35 -15.71 15 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 15 9 C 0.09 2.45 5.50 -17.34 -0.10 2.36 15 10 N -0.75 -22.43 11.73 55.56 0.65 -21.78 15 11 Si 0.92 19.77 29.56 -169.99 -5.02 14.74 15 12 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 15 C -0.09 -1.32 6.11 -91.78 -0.56 -1.88 15 16 C -0.17 -2.34 10.23 -26.74 -0.27 -2.61 15 17 C -0.17 -2.53 10.02 -26.74 -0.27 -2.80 15 18 H 0.07 0.91 8.14 -51.93 -0.42 0.48 15 19 H 0.07 0.81 8.12 -51.93 -0.42 0.39 15 20 H 0.06 0.94 6.31 -51.93 -0.33 0.61 15 21 H 0.37 7.84 6.34 -182.60 -1.16 6.68 15 22 H 0.27 7.28 8.29 -40.82 -0.34 6.94 15 23 H 0.11 1.32 8.14 -51.93 -0.42 0.89 15 24 H 0.09 1.48 8.14 -51.93 -0.42 1.05 15 25 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 27 H 0.11 2.09 7.58 -51.93 -0.39 1.69 15 LS Contribution 244.38 15.07 3.68 3.68 Total: -1.00 -35.13 244.38 -5.90 -41.03 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -3.96 Total: 5.64 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.86 Total: -5.32 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 1.19 Total: -40.89 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -35.13 -5.90 -41.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084207983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.941 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds