Wall clock time and date at job start Mon Mar 30 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28052 * 119.99718 * 2 1 4 4 N 1.40092 * 120.00109 * 359.97438 * 3 2 1 5 5 C 1.34784 * 119.99956 * 180.02562 * 4 3 2 6 6 O 1.21783 * 119.99901 * 359.97438 * 5 4 3 7 7 C 1.41741 * 119.99791 * 180.02562 * 5 4 3 8 8 H 1.08001 * 120.00619 * 359.97438 * 7 5 4 9 9 C 1.40181 * 119.99929 * 179.97438 * 7 5 4 10 10 N 1.30614 * 119.99701 * 359.97438 * 9 7 5 11 11 Si 1.86793 * 120.00145 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47232 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47146 * 120.00157 * 11 9 7 14 14 H 1.48498 * 109.47158 * 239.99867 * 11 9 7 15 15 C 1.50694 * 120.00128 * 179.97438 * 2 1 3 16 16 C 1.52995 * 117.50231 * 243.62472 * 15 2 1 17 17 C 1.52995 * 60.00032 * 252.50760 * 16 15 2 18 18 H 1.09001 * 109.46953 * 90.00305 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99903 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00534 * 1 2 3 21 21 H 0.97000 * 120.00520 * 0.02562 * 4 3 2 22 22 H 0.97000 * 120.00213 * 180.02562 * 10 9 7 23 23 H 1.09005 * 115.55100 * 29.33505 * 15 2 1 24 24 H 1.08995 * 117.50077 * 0.02562 * 16 15 2 25 25 H 1.09004 * 117.49772 * 145.01644 * 16 15 2 26 26 H 1.08995 * 117.50154 * 252.50193 * 17 16 15 27 27 H 1.09002 * 117.51350 * 107.47720 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1473 1.1090 0.0000 4 7 1.4468 2.3222 -0.0005 5 6 2.1207 3.4895 -0.0011 6 8 3.3385 3.4895 -0.0006 7 6 1.4119 4.7170 -0.0011 8 1 0.3319 4.7170 -0.0011 9 6 2.1127 5.9310 -0.0011 10 7 3.4189 5.9310 -0.0006 11 14 1.1787 7.5486 -0.0018 12 1 -0.2813 7.2773 -0.0017 13 1 1.5370 8.3276 1.2106 14 1 1.5379 8.3271 -1.2143 15 6 2.2606 -1.3050 0.0006 16 6 3.1359 -1.6149 1.2165 17 6 3.7846 -1.2410 -0.1177 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5137 21 1 0.4768 2.3223 -0.0005 22 1 3.9039 6.7710 -0.0002 23 1 1.7532 -2.1411 -0.4808 24 1 3.1665 -0.8750 2.0163 25 1 3.2044 -2.6550 1.5355 26 1 4.2800 -2.0349 -0.6765 27 1 4.2422 -0.2548 -0.1963 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084207983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:31 Heat of formation + Delta-G solvation = -3.322786 kcal Electronic energy + Delta-G solvation = -11944.709625 eV Core-core repulsion = 9703.268616 eV Total energy + Delta-G solvation = -2241.441009 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.98453 -38.73916 -36.48146 -34.72449 -32.65169 -29.81406 -28.22655 -24.56866 -23.17906 -22.18377 -20.26289 -19.10566 -17.66216 -16.92317 -16.53117 -15.89252 -15.41455 -15.07474 -14.67588 -14.31419 -13.56111 -13.33427 -12.89336 -12.72601 -12.52427 -12.43958 -12.30909 -11.98946 -11.38344 -11.37288 -10.99758 -10.65628 -9.97953 -9.24585 -8.42305 -7.08450 1.20546 1.37838 1.42747 1.58072 2.10237 2.39286 2.42705 3.08560 3.57146 3.63835 4.03580 4.15124 4.32265 4.35626 4.56678 4.71421 4.82947 4.98034 5.14359 5.17936 5.30386 5.36827 5.48180 5.80896 6.05598 6.68561 7.04208 7.52142 8.43222 8.60433 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.067357 B = 0.008134 C = 0.007421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.594376 B = 3441.593365 C = 3772.331148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 N -0.282 5.282 4 N -0.602 5.602 5 C 0.545 3.455 6 O -0.617 6.617 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.029 3.971 10 N -0.806 5.806 11 Si 1.011 2.989 12 H -0.243 1.243 13 H -0.265 1.265 14 H -0.265 1.265 15 C -0.096 4.096 16 C -0.151 4.151 17 C -0.182 4.182 18 H 0.089 0.911 19 H 0.110 0.890 20 H 0.054 0.946 21 H 0.381 0.619 22 H 0.281 0.719 23 H 0.162 0.838 24 H 0.066 0.934 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.172 -10.848 0.366 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 N -0.088 5.088 4 N -0.349 5.349 5 C 0.353 3.647 6 O -0.502 6.502 7 C -0.602 4.602 8 H 0.111 0.889 9 C -0.189 4.189 10 N -0.435 5.435 11 Si 0.829 3.171 12 H -0.166 1.166 13 H -0.189 1.189 14 H -0.189 1.189 15 C -0.116 4.116 16 C -0.190 4.190 17 C -0.219 4.219 18 H 0.107 0.893 19 H 0.129 0.871 20 H 0.073 0.927 21 H 0.220 0.780 22 H 0.091 0.909 23 H 0.180 0.820 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.142 0.858 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.307 -10.184 0.361 11.985 hybrid contribution -1.167 0.675 0.008 1.348 sum -7.474 -9.509 0.369 12.101 Atomic orbital electron populations 1.21249 0.90614 1.04267 1.04037 1.24692 0.95587 0.92496 0.98885 1.74051 1.28988 0.93237 1.12524 1.47260 1.07641 1.01903 1.78059 1.17480 0.87327 0.82440 0.77450 1.90586 1.16048 1.86936 1.56637 1.20538 0.95523 0.89962 1.54199 0.88877 1.27165 0.95561 1.05377 0.90769 1.70196 1.10000 1.29641 1.33629 0.84787 0.79270 0.74202 0.78854 1.16582 1.18949 1.18920 1.21016 0.92057 0.93700 1.04869 1.23017 1.02129 1.03242 0.90614 1.22939 0.94752 1.02581 1.01642 0.89269 0.87145 0.92749 0.77962 0.90912 0.82027 0.91521 0.84576 0.85756 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.51 71.24 0.68 -2.93 15 2 C 0.08 2.65 6.87 46.53 0.32 2.97 15 3 N -0.28 -13.52 10.01 -41.18 -0.41 -13.93 15 4 N -0.60 -31.09 6.08 -179.94 -1.09 -32.18 15 5 C 0.54 34.33 7.69 85.11 0.65 34.98 15 6 O -0.62 -45.07 15.22 -4.61 -0.07 -45.14 15 7 C -0.57 -33.00 9.31 23.61 0.22 -32.78 15 8 H 0.09 4.77 7.85 -2.91 -0.02 4.75 15 9 C 0.03 1.63 5.50 85.35 0.47 2.10 15 10 N -0.81 -50.21 11.73 21.86 0.26 -49.95 15 11 Si 1.01 40.51 29.56 68.60 2.03 42.53 15 12 H -0.24 -8.89 7.11 99.48 0.71 -8.18 15 13 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 14 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 15 C -0.10 -2.53 6.11 -11.54 -0.07 -2.60 15 16 C -0.15 -3.82 10.23 30.59 0.31 -3.51 15 17 C -0.18 -5.34 10.02 30.59 0.31 -5.03 15 18 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 19 H 0.11 1.98 8.12 -2.39 -0.02 1.96 15 20 H 0.05 1.51 6.31 -2.39 -0.02 1.49 15 21 H 0.38 16.56 6.34 -213.32 -1.35 15.21 15 22 H 0.28 15.54 8.29 -92.71 -0.77 14.77 15 23 H 0.16 2.80 8.14 -2.38 -0.02 2.78 15 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.14 2.30 8.14 -2.39 -0.02 2.28 15 26 H 0.12 2.77 8.14 -2.39 -0.02 2.76 15 27 H 0.06 2.43 7.58 -2.39 -0.02 2.41 15 Total: -1.00 -83.46 244.38 3.42 -80.04 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.17 Total: 25.42 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 2.89 Total: -6.80 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -1.25 Total: -96.06 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.07 Total: -45.14 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -83.46 3.42 -80.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084207983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.714 kcal (2) G-P(sol) polarization free energy of solvation -83.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds