Wall clock time and date at job start Mon Mar 30 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51275 * 137.66922 * 2 1 4 4 N 1.47130 * 87.69541 * 205.78498 * 3 2 1 5 5 C 1.34784 * 136.18351 * 153.55217 * 4 3 2 6 6 O 1.21583 * 119.99855 * 359.72844 * 5 4 3 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46931 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99569 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00138 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47675 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47348 * 119.99771 * 13 11 9 16 16 H 1.48505 * 109.46905 * 239.99775 * 13 11 9 17 17 C 1.47120 * 87.62838 * 333.80727 * 4 3 2 18 18 H 1.07994 * 120.00145 * 359.97438 * 1 2 3 19 19 H 1.07997 * 119.99797 * 180.02562 * 1 2 3 20 20 H 1.09000 * 113.51501 * 91.08512 * 3 2 1 21 21 H 1.08994 * 113.57712 * 320.50187 * 3 2 1 22 22 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 23 23 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 24 24 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 25 25 H 0.97002 * 119.99797 * 180.02562 * 12 11 9 26 26 H 1.09005 * 113.51344 * 140.90026 * 17 4 3 27 27 H 1.09000 * 113.51672 * 271.47862 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0187 0.0000 4 7 3.2760 0.0003 -0.6395 5 6 4.3522 0.0005 -1.4511 6 8 4.8344 1.0536 -1.8208 7 7 4.8905 -1.1665 -1.8566 8 6 6.0599 -1.1662 -2.7392 9 6 6.4611 -2.5869 -3.0419 10 1 5.9008 -3.4080 -2.6195 11 6 7.5434 -2.8387 -3.8582 12 7 8.2254 -1.8389 -4.3730 13 14 8.0403 -4.5997 -4.2339 14 1 7.1183 -5.5333 -3.5386 15 1 7.9690 -4.8323 -5.6989 16 1 9.4290 -4.8335 -3.7626 17 6 2.4246 -1.0184 -0.0057 18 1 -0.5400 0.9352 0.0004 19 1 -0.5400 -0.9353 0.0004 20 1 2.7626 1.2976 0.9993 21 1 2.2316 1.8821 -0.6354 22 1 4.5033 -2.0067 -1.5648 23 1 5.8136 -0.6527 -3.6686 24 1 6.8858 -0.6519 -2.2478 25 1 8.9866 -2.0160 -4.9475 26 1 2.2236 -1.8771 -0.6465 27 1 2.7577 -1.3044 0.9919 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246668056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:05 Heat of formation + Delta-G solvation = 32.637333 kcal Electronic energy + Delta-G solvation = -11839.283634 eV Core-core repulsion = 9599.401972 eV Total energy + Delta-G solvation = -2239.881662 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.02147 -37.62574 -34.10013 -32.36349 -31.53510 -27.86054 -26.17252 -25.77615 -22.33014 -19.63952 -18.26175 -17.81584 -15.99127 -15.75438 -15.66682 -14.71503 -14.34448 -13.90131 -13.49865 -12.96633 -12.81059 -12.09936 -11.92819 -11.78501 -10.91590 -10.90415 -10.41238 -10.29591 -9.70054 -9.34649 -9.25455 -8.73210 -8.48905 -7.73565 -6.14443 -4.20941 1.96905 3.07592 3.24882 3.31934 3.35430 3.94564 4.09474 4.32374 4.61299 4.90006 5.21627 5.39188 5.42352 5.57951 5.63424 5.77543 5.94767 6.18090 6.58521 7.26152 7.51821 7.57671 7.64534 7.95079 8.08401 8.77689 8.91111 9.33492 9.48949 10.95935 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066148 B = 0.007225 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.189175 B = 3874.456721 C = 4209.550551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.169 4.169 3 C 0.156 3.844 4 N -0.671 5.671 5 C 0.727 3.273 6 O -0.595 6.595 7 N -0.725 5.725 8 C 0.266 3.734 9 C -0.541 4.541 10 H 0.063 0.937 11 C 0.063 3.937 12 N -0.885 5.885 13 Si 0.905 3.095 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.132 3.868 18 H 0.110 0.890 19 H 0.111 0.889 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.386 0.614 23 H 0.025 0.975 24 H 0.026 0.974 25 H 0.265 0.735 26 H 0.079 0.921 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.274 -0.109 9.240 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.170 4.170 3 C 0.032 3.968 4 N -0.413 5.413 5 C 0.430 3.570 6 O -0.474 6.474 7 N -0.376 5.376 8 C 0.145 3.855 9 C -0.579 4.579 10 H 0.081 0.919 11 C -0.141 4.141 12 N -0.523 5.523 13 Si 0.732 3.268 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.009 3.991 18 H 0.128 0.872 19 H 0.129 0.871 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.218 0.782 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.097 0.903 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.441 0.704 8.631 15.158 hybrid contribution 0.213 -1.344 -0.093 1.364 sum -12.228 -0.639 8.538 14.927 Atomic orbital electron populations 1.22794 0.92701 1.02539 1.00814 1.22977 0.93971 0.98895 1.01114 1.21846 0.84590 0.92785 0.97537 1.48538 1.31368 1.10178 1.51179 1.15414 0.77728 0.85394 0.78431 1.90880 1.63344 1.31184 1.61945 1.45672 1.34073 1.05065 1.52791 1.19029 0.80941 0.97299 0.88188 1.21254 1.14213 0.91504 1.30971 0.91900 1.24954 0.95891 0.97827 0.95402 1.69994 1.19341 1.30830 1.32102 0.86339 0.78446 0.83824 0.78148 1.19663 1.20789 1.20797 1.21991 0.85968 0.93041 0.98118 0.87159 0.87134 0.89462 0.90245 0.78161 0.95664 0.95643 0.92499 0.90275 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 14.71 29.01 0.43 -0.86 15 2 C -0.17 -1.85 7.52 -100.68 -0.76 -2.61 15 3 C 0.16 2.07 8.59 -10.22 -0.09 1.99 15 4 N -0.67 -11.56 3.71 -197.49 -0.73 -12.29 15 5 C 0.73 16.56 8.80 -86.92 -0.76 15.80 15 6 O -0.59 -16.09 17.12 5.29 0.09 -16.00 15 7 N -0.72 -16.68 5.55 -66.41 -0.37 -17.05 15 8 C 0.27 7.40 5.43 -5.19 -0.03 7.37 15 9 C -0.54 -15.09 9.28 -34.44 -0.32 -15.41 15 10 H 0.06 1.65 7.60 -52.48 -0.40 1.25 15 11 C 0.06 1.77 5.46 -17.82 -0.10 1.68 15 12 N -0.89 -26.53 13.29 55.43 0.74 -25.80 15 13 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 15 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 17 C 0.13 1.62 8.24 -10.37 -0.09 1.53 15 18 H 0.11 0.79 8.06 -52.49 -0.42 0.36 15 19 H 0.11 0.78 8.06 -52.49 -0.42 0.35 15 20 H 0.09 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 22 H 0.39 7.74 8.05 -40.82 -0.33 7.41 15 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.03 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 27 H 0.09 0.92 8.14 -51.93 -0.42 0.49 15 LS Contribution 247.47 15.07 3.73 3.73 Total: -1.00 -33.91 247.47 -6.52 -40.43 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.24 Total: 1.38 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: -1.71 Total: 9.49 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.36 Total: -55.14 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.09 Total: -16.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.91 -6.52 -40.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246668056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.065 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds