Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 126.03927 * 2 1 4 4 N 1.34947 * 107.74996 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.04206 * 180.02562 * 4 3 2 6 6 N 1.40089 * 107.92338 * 359.97438 * 4 3 2 7 7 C 1.30841 * 108.19985 * 359.72247 * 6 4 3 8 8 C 1.50702 * 125.89554 * 180.25574 * 7 6 4 9 9 H 1.09000 * 109.47171 * 165.20943 * 8 7 6 10 10 O 1.42910 * 109.47253 * 45.21537 * 8 7 6 11 11 C 1.50696 * 109.47560 * 285.21322 * 8 7 6 12 12 H 1.08003 * 119.99684 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00367 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99719 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00053 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46920 * 89.99631 * 15 13 11 17 17 H 1.48494 * 109.46924 * 209.99541 * 15 13 11 18 18 H 1.48497 * 109.47096 * 329.99892 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02740 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02840 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02821 * 1 2 3 22 22 H 1.08003 * 126.12903 * 0.02562 * 3 2 1 23 23 H 1.09003 * 109.47579 * 89.99250 * 5 4 3 24 24 H 1.09004 * 109.47337 * 209.99370 * 5 4 3 25 25 H 1.09000 * 109.47270 * 329.99299 * 5 4 3 26 26 H 0.96700 * 113.99560 * 299.99834 * 10 8 7 27 27 H 0.97000 * 119.99905 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5844 0.6707 -0.0006 5 6 4.7745 1.5249 -0.0003 6 7 3.5755 -0.7302 -0.0003 7 6 2.3300 -1.1309 0.0064 8 6 1.8628 -2.5637 0.0145 9 1 0.8065 -2.5999 0.2812 10 8 2.6212 -3.3066 0.9711 11 6 2.0560 -3.1629 -1.3546 12 1 2.4756 -2.5661 -2.1510 13 6 1.6971 -4.4731 -1.5907 14 7 1.1867 -5.1999 -0.6209 15 14 1.9360 -5.2156 -3.2881 16 1 3.2852 -5.8300 -3.3741 17 1 0.9026 -6.2557 -3.5232 18 1 1.8103 -4.1514 -4.3161 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 1.9724 2.1223 0.0004 23 1 5.0699 1.7362 1.0275 24 1 5.5886 1.0140 -0.5145 25 1 4.5507 2.4601 -0.5135 26 1 3.5722 -3.3176 0.7960 27 1 0.9345 -6.1218 -0.7868 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535651179.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = 21.475789 kcal Electronic energy + Delta-G solvation = -12317.173701 eV Core-core repulsion = 10076.808038 eV Total energy + Delta-G solvation = -2240.365663 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.48819 -35.55837 -32.95551 -32.07827 -30.81572 -28.18300 -26.59961 -24.58754 -22.61386 -19.93040 -18.76221 -16.89514 -16.14038 -14.91002 -14.57941 -14.44124 -13.63608 -13.16824 -12.93049 -12.69590 -12.23616 -11.91700 -11.73590 -11.51122 -11.06237 -10.88404 -10.86857 -10.14658 -9.79565 -9.25563 -8.64773 -8.44386 -8.14502 -7.59348 -5.96516 -4.13148 2.52785 3.13859 3.32828 3.38664 3.42455 3.63659 4.46185 4.93235 5.24466 5.32719 5.35690 5.55512 5.75279 5.90407 6.13378 6.27042 6.42292 6.49940 6.68326 6.86019 7.42895 7.61751 7.72863 7.88872 8.18082 8.59384 8.88177 9.42124 9.61585 11.07665 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.010877 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740576 B = 2573.532497 C = 2695.426932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.234 4.234 3 C 0.031 3.969 4 N -0.396 5.396 5 C 0.111 3.889 6 N -0.297 5.297 7 C 0.090 3.910 8 C 0.300 3.700 9 H 0.077 0.923 10 O -0.560 6.560 11 C -0.555 4.555 12 H 0.056 0.944 13 C 0.079 3.921 14 N -0.861 5.861 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.274 1.274 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.162 0.838 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.352 0.648 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 11.799 0.442 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.246 4.246 3 C -0.113 4.113 4 N -0.179 5.179 5 C -0.031 4.031 6 N -0.119 5.119 7 C -0.078 4.078 8 C 0.241 3.759 9 H 0.095 0.905 10 O -0.362 6.362 11 C -0.594 4.594 12 H 0.074 0.926 13 C -0.127 4.127 14 N -0.497 5.497 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.179 0.821 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.197 0.803 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.808 11.290 0.769 11.660 hybrid contribution -0.068 0.184 -1.295 1.310 sum 2.740 11.475 -0.526 11.809 Atomic orbital electron populations 1.20006 0.89839 1.01423 1.01348 1.20083 0.97017 0.91703 1.15780 1.22067 0.84778 0.99167 1.05339 1.48402 1.04810 1.05460 1.59204 1.21615 0.86357 0.92829 1.02345 1.77319 1.21355 0.87022 1.26200 1.24143 0.89559 0.99623 0.94473 1.18057 0.91917 0.76966 0.88995 0.90512 1.86532 1.21076 1.75400 1.53180 1.21474 1.44626 0.97307 0.95957 0.92592 1.25014 0.93986 0.96974 0.96719 1.70069 1.40043 1.08300 1.31312 0.86594 0.77952 0.78909 0.84480 1.20517 1.21051 1.19876 0.92294 0.93183 0.91492 0.82105 0.91708 0.89866 0.90483 0.80327 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.13 36.01 0.36 -0.81 15 2 C -0.23 -4.76 6.10 -105.06 -0.64 -5.40 15 3 C 0.03 0.54 11.40 -17.23 -0.20 0.34 15 4 N -0.40 -7.22 4.01 -68.16 -0.27 -7.49 15 5 C 0.11 1.34 11.47 59.84 0.69 2.03 15 6 N -0.30 -6.84 12.48 33.67 0.42 -6.42 15 7 C 0.09 2.16 6.02 -82.41 -0.50 1.66 15 8 C 0.30 8.14 3.24 -29.04 -0.09 8.05 15 9 H 0.08 2.17 6.92 -51.93 -0.36 1.81 15 10 O -0.56 -15.58 12.72 -35.23 -0.45 -16.03 15 11 C -0.55 -15.98 8.75 -34.44 -0.30 -16.28 15 12 H 0.06 1.64 7.74 -52.48 -0.41 1.23 15 13 C 0.08 2.26 5.40 -17.82 -0.10 2.16 15 14 N -0.86 -25.71 12.84 55.43 0.71 -25.00 15 15 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 15 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 19 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 1.22 7.09 -51.93 -0.37 0.85 15 22 H 0.16 2.01 8.06 -52.48 -0.42 1.58 15 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.35 9.13 8.95 45.56 0.41 9.54 15 27 H 0.26 7.34 8.31 -40.82 -0.34 7.01 15 LS Contribution 243.21 15.07 3.67 3.67 Total: -1.00 -33.65 243.21 -4.12 -37.77 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -2.40 Total: 5.01 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.77 Total: -8.24 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.86 Total: -38.91 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.45 Total: -16.03 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.65 -4.12 -37.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535651179.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.245 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds