Wall clock time and date at job start Mon Mar 30 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 126.03927 * 2 1 4 4 N 1.34947 * 107.74996 * 180.02562 * 3 2 1 5 5 C 1.46495 * 126.04206 * 180.02562 * 4 3 2 6 6 N 1.40089 * 107.92338 * 359.97438 * 4 3 2 7 7 C 1.30841 * 108.19985 * 359.72247 * 6 4 3 8 8 C 1.50702 * 125.89554 * 180.25574 * 7 6 4 9 9 H 1.09000 * 109.47171 * 165.20943 * 8 7 6 10 10 O 1.42910 * 109.47253 * 45.21537 * 8 7 6 11 11 C 1.50696 * 109.47560 * 285.21322 * 8 7 6 12 12 H 1.08003 * 119.99684 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00367 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99719 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00053 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46920 * 89.99631 * 15 13 11 17 17 H 1.48494 * 109.46924 * 209.99541 * 15 13 11 18 18 H 1.48497 * 109.47096 * 329.99892 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.02740 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02840 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02821 * 1 2 3 22 22 H 1.08003 * 126.12903 * 0.02562 * 3 2 1 23 23 H 1.09003 * 109.47579 * 89.99250 * 5 4 3 24 24 H 1.09004 * 109.47337 * 209.99370 * 5 4 3 25 25 H 1.09000 * 109.47270 * 329.99299 * 5 4 3 26 26 H 0.96700 * 113.99560 * 299.99834 * 10 8 7 27 27 H 0.97000 * 119.99905 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0941 0.0000 4 7 3.5844 0.6707 -0.0006 5 6 4.7745 1.5249 -0.0003 6 7 3.5755 -0.7302 -0.0003 7 6 2.3300 -1.1309 0.0064 8 6 1.8628 -2.5637 0.0145 9 1 0.8065 -2.5999 0.2812 10 8 2.6212 -3.3066 0.9711 11 6 2.0560 -3.1629 -1.3546 12 1 2.4756 -2.5661 -2.1510 13 6 1.6971 -4.4731 -1.5907 14 7 1.1867 -5.1999 -0.6209 15 14 1.9360 -5.2156 -3.2881 16 1 3.2852 -5.8300 -3.3741 17 1 0.9026 -6.2557 -3.5232 18 1 1.8103 -4.1514 -4.3161 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 1.9724 2.1223 0.0004 23 1 5.0699 1.7362 1.0275 24 1 5.5886 1.0140 -0.5145 25 1 4.5507 2.4601 -0.5135 26 1 3.5722 -3.3176 0.7960 27 1 0.9345 -6.1218 -0.7868 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535651179.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:02 Heat of formation + Delta-G solvation = -4.672515 kcal Electronic energy + Delta-G solvation = -12318.307576 eV Core-core repulsion = 10076.808038 eV Total energy + Delta-G solvation = -2241.499538 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.99654 -37.61427 -34.38676 -34.29827 -32.31179 -29.86145 -28.26747 -26.21844 -24.41140 -21.38712 -20.45535 -19.08144 -17.56730 -16.69649 -16.32499 -16.22394 -15.43187 -14.88268 -14.17719 -14.09547 -13.95004 -13.43872 -13.17166 -13.11782 -12.81130 -12.74634 -12.73172 -12.10431 -11.47648 -11.24697 -10.75657 -10.42689 -9.95299 -9.06172 -8.14944 -6.40852 1.09570 1.39250 1.40548 1.51821 1.87159 1.95920 2.41580 3.09737 3.78469 4.04694 4.28522 4.39339 4.48654 4.54708 4.67910 4.71916 4.93729 5.00929 5.22357 5.42817 5.53299 5.65549 5.86487 6.03256 6.39797 6.65123 6.97205 7.25804 7.42554 8.89340 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.010877 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740576 B = 2573.532497 C = 2695.426932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.270 4.270 3 C 0.059 3.941 4 N -0.390 5.390 5 C 0.098 3.902 6 N -0.336 5.336 7 C 0.054 3.946 8 C 0.301 3.699 9 H 0.052 0.948 10 O -0.575 6.575 11 C -0.569 4.569 12 H 0.044 0.956 13 C 0.029 3.971 14 N -0.897 5.897 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.274 1.274 18 H -0.269 1.269 19 H 0.058 0.942 20 H 0.088 0.912 21 H 0.041 0.959 22 H 0.220 0.780 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.356 0.644 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 14.058 -0.432 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.281 4.281 3 C -0.087 4.087 4 N -0.172 5.172 5 C -0.042 4.042 6 N -0.159 5.159 7 C -0.111 4.111 8 C 0.242 3.758 9 H 0.069 0.931 10 O -0.378 6.378 11 C -0.608 4.608 12 H 0.062 0.938 13 C -0.174 4.174 14 N -0.533 5.533 15 Si 0.789 3.211 16 H -0.199 1.199 17 H -0.199 1.199 18 H -0.194 1.194 19 H 0.077 0.923 20 H 0.107 0.893 21 H 0.060 0.940 22 H 0.236 0.764 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.138 0.862 26 H 0.201 0.799 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.290 13.556 -0.104 13.950 hybrid contribution -0.131 -0.383 -0.968 1.049 sum 3.159 13.173 -1.072 13.589 Atomic orbital electron populations 1.19998 0.88419 1.02108 1.01568 1.20477 0.98515 0.91514 1.17643 1.22823 0.83565 1.00730 1.01627 1.48856 1.07108 1.04190 1.57060 1.22125 0.84389 0.93322 1.04355 1.77154 1.21047 0.90363 1.27381 1.23639 0.91190 0.98939 0.97369 1.17741 0.90703 0.79449 0.87942 0.93069 1.86468 1.21434 1.76227 1.53676 1.21650 1.44776 0.97826 0.96504 0.93770 1.25869 0.93380 0.97252 1.00855 1.70187 1.40843 1.08729 1.33580 0.85487 0.78212 0.78117 0.79319 1.19896 1.19873 1.19384 0.92278 0.89279 0.93972 0.76357 0.89679 0.90099 0.86166 0.79915 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.13 71.24 0.72 -1.40 15 2 C -0.27 -10.72 6.10 -20.15 -0.12 -10.84 15 3 C 0.06 1.81 11.40 83.54 0.95 2.76 15 4 N -0.39 -13.15 4.01 -369.57 -1.48 -14.63 15 5 C 0.10 1.99 11.47 127.77 1.47 3.45 15 6 N -0.34 -15.43 12.48 -47.38 -0.59 -16.02 15 7 C 0.05 2.67 6.02 43.10 0.26 2.93 15 8 C 0.30 17.07 3.24 29.10 0.09 17.16 15 9 H 0.05 3.10 6.92 -2.39 -0.02 3.08 15 10 O -0.58 -33.53 12.72 -148.98 -1.90 -35.43 15 11 C -0.57 -33.84 8.75 25.60 0.22 -33.61 15 12 H 0.04 2.66 7.74 -2.91 -0.02 2.64 15 13 C 0.03 1.70 5.40 84.66 0.46 2.16 15 14 N -0.90 -54.88 12.84 21.45 0.28 -54.60 15 15 Si 0.96 45.19 29.54 68.60 2.03 47.22 15 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 19 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 20 H 0.09 2.22 8.14 -2.39 -0.02 2.20 15 21 H 0.04 1.58 7.09 -2.38 -0.02 1.57 15 22 H 0.22 4.01 8.06 -2.91 -0.02 3.99 15 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.12 1.46 8.14 -2.39 -0.02 1.44 15 26 H 0.36 19.43 8.95 -74.06 -0.66 18.77 15 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -75.54 243.21 2.90 -72.65 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.51 Total: 18.21 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 4.05 Total: -17.38 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.80 Total: -85.26 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.90 Total: -35.43 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.54 2.90 -72.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535651179.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.975 kcal (2) G-P(sol) polarization free energy of solvation -75.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds