Wall clock time and date at job start Mon Mar 30 2020 01:50:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.34522 * 125.78536 * 2 1
4 4 C 1.41391 * 106.83584 * 180.11597 * 3 2 1
5 5 C 1.50699 * 126.57402 * 179.83496 * 4 3 2
6 6 H 1.09000 * 109.46916 * 144.69114 * 5 4 3
7 7 O 1.42895 * 109.47485 * 24.68663 * 5 4 3
8 8 C 1.50706 * 109.46824 * 264.68447 * 5 4 3
9 9 H 1.07999 * 120.00193 * 0.02562 * 8 5 4
10 10 C 1.37879 * 119.99398 * 180.02562 * 8 5 4
11 11 N 1.31514 * 119.99350 * 180.02562 * 10 8 5
12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 5
13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 8
14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 8
15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 8
16 16 C 1.34511 * 106.84071 * 359.57278 * 4 3 2
17 17 C 1.50697 * 125.78784 * 180.29533 * 16 4 3
18 18 O 1.34301 * 125.79131 * 179.63757 * 2 1 3
19 19 H 1.08994 * 109.47219 * 180.33960 * 1 2 3
20 20 H 1.09008 * 109.47082 * 300.34176 * 1 2 3
21 21 H 1.09003 * 109.47228 * 60.33945 * 1 2 3
22 22 H 1.07995 * 126.58427 * 359.95277 * 3 2 1
23 23 H 0.96698 * 114.00355 * 300.00283 * 7 5 4
24 24 H 0.97005 * 119.99661 * 179.97438 * 11 10 8
25 25 H 1.08999 * 109.47098 * 90.00396 * 17 16 4
26 26 H 1.09005 * 109.47020 * 210.00200 * 17 16 4
27 27 H 1.09001 * 109.47440 * 330.00000 * 17 16 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2936 1.0913 0.0000
4 6 3.6309 0.6321 -0.0027
5 6 4.8731 1.4852 -0.0073
6 1 5.6489 1.0004 0.5855
7 8 4.5744 2.7648 0.5542
8 6 5.3581 1.6588 -1.4236
9 1 4.8202 1.1979 -2.2389
10 6 6.4884 2.4061 -1.6784
11 7 6.9113 2.5580 -2.9144
12 14 7.4191 3.2027 -0.2682
13 1 6.8769 4.5632 -0.0231
14 1 7.2612 2.3786 0.9571
15 1 8.8592 3.2993 -0.6175
16 6 3.5814 -0.7121 0.0054
17 6 4.7706 -1.6377 0.0123
18 8 2.2924 -1.0894 0.0069
19 1 -0.3633 -1.0276 0.0061
20 1 -0.3634 0.5192 0.8870
21 1 -0.3634 0.5086 -0.8930
22 1 1.9665 2.1205 -0.0007
23 1 3.8906 3.2540 0.0765
24 1 7.7063 3.0841 -3.0937
25 1 5.0561 -1.8546 1.0415
26 1 4.5112 -2.5663 -0.4963
27 1 5.6045 -1.1617 -0.5036
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001535679832.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:50:28
Heat of formation + Delta-G solvation = -46.850767 kcal
Electronic energy + Delta-G solvation = -12398.180888 eV
Core-core repulsion = 10122.559613 eV
Total energy + Delta-G solvation = -2275.621275 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 196.089 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-41.93896 -36.25044 -32.54385 -32.37950 -32.19787 -29.04747 -27.49161 -24.15275
-22.49514 -20.43699 -18.85735 -17.28681 -15.94760 -15.62469 -14.81382 -14.23157
-13.78712 -13.29785 -13.01624 -12.81915 -12.72249 -12.23865 -12.13859 -11.87279
-11.61361 -11.17743 -10.89155 -10.79239 -9.99952 -9.34552 -9.02596 -8.67166
-8.48842 -7.42703 -6.14029 -4.25740 2.32194 3.34875 3.43279 3.47099
3.50947 3.59929 4.48133 5.10858 5.18952 5.40897 5.62860 5.64301
5.67964 5.85700 5.90163 5.97891 6.00954 6.38581 6.42560 6.63651
6.84662 7.23594 7.31276 7.53281 7.85732 8.29701 8.81410 8.98867
9.48339 10.96166
Molecular weight = 196.09amu
Principal moments of inertia in cm(-1)
A = 0.048410 B = 0.011394 C = 0.010725
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 578.250865 B = 2456.916310 C = 2610.083902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.043 4.043
3 C -0.193 4.193
4 C -0.154 4.154
5 C 0.251 3.749
6 H 0.069 0.931
7 O -0.582 6.582
8 C -0.551 4.551
9 H 0.074 0.926
10 C 0.082 3.918
11 N -0.891 5.891
12 Si 0.912 3.088
13 H -0.278 1.278
14 H -0.268 1.268
15 H -0.304 1.304
16 C -0.034 4.034
17 C -0.067 4.067
18 O -0.185 6.185
19 H 0.068 0.932
20 H 0.077 0.923
21 H 0.078 0.922
22 H 0.140 0.860
23 H 0.362 0.638
24 H 0.266 0.734
25 H 0.069 0.931
26 H 0.065 0.935
27 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.269 -4.725 6.088 11.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.092 4.092
3 C -0.213 4.213
4 C -0.155 4.155
5 C 0.194 3.806
6 H 0.086 0.914
7 O -0.388 6.388
8 C -0.588 4.588
9 H 0.092 0.908
10 C -0.123 4.123
11 N -0.528 5.528
12 Si 0.741 3.259
13 H -0.204 1.204
14 H -0.193 1.193
15 H -0.232 1.232
16 C -0.083 4.083
17 C -0.123 4.123
18 O -0.083 6.083
19 H 0.087 0.913
20 H 0.096 0.904
21 H 0.097 0.903
22 H 0.158 0.842
23 H 0.209 0.791
24 H 0.075 0.925
25 H 0.088 0.912
26 H 0.084 0.916
27 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -7.780 -5.138 6.402 11.310
hybrid contribution 0.091 0.803 0.043 0.809
sum -7.689 -4.335 6.445 10.929
Atomic orbital electron populations
1.20155 0.85892 1.03085 1.02912 1.22129 0.93477 0.84591 1.09030
1.21300 0.92588 0.98918 1.08454 1.21279 0.96987 0.93784 1.03494
1.18414 0.87996 0.79613 0.94553 0.91386 1.86366 1.61163 1.32598
1.58682 1.21448 1.11677 1.34098 0.91598 0.90777 1.25033 0.96453
0.94887 0.95900 1.69957 1.24131 1.39356 1.19374 0.86276 0.76660
0.80651 0.82297 1.20356 1.19250 1.23208 1.22017 0.82544 0.94483
1.09268 1.20247 0.92441 0.97199 1.02441 1.83845 1.16658 1.34887
1.72921 0.91290 0.90400 0.90283 0.84170 0.79142 0.92466 0.91226
0.91577 0.88265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.78 10.42 36.00 0.37 -0.40 15
2 C -0.04 -0.76 7.32 -35.62 -0.26 -1.02 15
3 C -0.19 -3.81 10.12 -39.70 -0.40 -4.21 15
4 C -0.15 -3.43 5.21 -104.74 -0.55 -3.98 15
5 C 0.25 6.19 2.32 -29.03 -0.07 6.12 15
6 H 0.07 1.70 7.07 -51.93 -0.37 1.34 15
7 O -0.58 -13.82 10.85 -35.23 -0.38 -14.20 15
8 C -0.55 -15.55 9.33 -34.44 -0.32 -15.87 15
9 H 0.07 2.30 7.98 -52.49 -0.42 1.88 15
10 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15
11 N -0.89 -27.09 13.96 55.43 0.77 -26.31 15
12 Si 0.91 23.14 26.18 -169.99 -4.45 18.69 15
13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15
14 H -0.27 -6.71 6.54 56.52 0.37 -6.34 15
15 H -0.30 -7.61 7.11 56.52 0.40 -7.21 15
16 C -0.03 -0.70 7.32 -35.63 -0.26 -0.97 15
17 C -0.07 -1.14 10.11 36.00 0.36 -0.78 15
18 O -0.18 -3.60 10.65 5.70 0.06 -3.54 15
19 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15
20 H 0.08 0.80 8.14 -51.92 -0.42 0.38 15
21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15
22 H 0.14 2.46 7.63 -52.49 -0.40 2.06 15
23 H 0.36 7.61 8.25 45.56 0.38 7.99 15
24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15
25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15
26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15
27 H 0.10 1.83 7.87 -51.93 -0.41 1.42 15
LS Contribution 237.83 15.07 3.58 3.58
Total: -1.00 -32.46 237.83 -4.13 -36.59
By element:
Atomic # 1 Polarization: 6.52 SS G_CDS: -2.50 Total: 4.02 kcal
Atomic # 6 Polarization: -17.62 SS G_CDS: -1.22 Total: -18.83 kcal
Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.31 kcal
Atomic # 8 Polarization: -17.42 SS G_CDS: -0.32 Total: -17.74 kcal
Atomic # 14 Polarization: 23.14 SS G_CDS: -4.45 Total: 18.69 kcal
Total LS contribution 3.58 Total: 3.58 kcal
Total: -32.46 -4.13 -36.59 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001535679832.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.262 kcal
(2) G-P(sol) polarization free energy of solvation -32.458 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds