Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34522 * 125.78536 * 2 1 4 4 C 1.41391 * 106.83584 * 180.11597 * 3 2 1 5 5 C 1.50699 * 126.57402 * 179.83496 * 4 3 2 6 6 H 1.09000 * 109.46916 * 144.69114 * 5 4 3 7 7 O 1.42895 * 109.47485 * 24.68663 * 5 4 3 8 8 C 1.50706 * 109.46824 * 264.68447 * 5 4 3 9 9 H 1.07999 * 120.00193 * 0.02562 * 8 5 4 10 10 C 1.37879 * 119.99398 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99350 * 180.02562 * 10 8 5 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 5 13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 8 14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 8 15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 8 16 16 C 1.34511 * 106.84071 * 359.57278 * 4 3 2 17 17 C 1.50697 * 125.78784 * 180.29533 * 16 4 3 18 18 O 1.34301 * 125.79131 * 179.63757 * 2 1 3 19 19 H 1.08994 * 109.47219 * 180.33960 * 1 2 3 20 20 H 1.09008 * 109.47082 * 300.34176 * 1 2 3 21 21 H 1.09003 * 109.47228 * 60.33945 * 1 2 3 22 22 H 1.07995 * 126.58427 * 359.95277 * 3 2 1 23 23 H 0.96698 * 114.00355 * 300.00283 * 7 5 4 24 24 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.47098 * 90.00396 * 17 16 4 26 26 H 1.09005 * 109.47020 * 210.00200 * 17 16 4 27 27 H 1.09001 * 109.47440 * 330.00000 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6309 0.6321 -0.0027 5 6 4.8731 1.4852 -0.0073 6 1 5.6489 1.0004 0.5855 7 8 4.5744 2.7648 0.5542 8 6 5.3581 1.6588 -1.4236 9 1 4.8202 1.1979 -2.2389 10 6 6.4884 2.4061 -1.6784 11 7 6.9113 2.5580 -2.9144 12 14 7.4191 3.2027 -0.2682 13 1 6.8769 4.5632 -0.0231 14 1 7.2612 2.3786 0.9571 15 1 8.8592 3.2993 -0.6175 16 6 3.5814 -0.7121 0.0054 17 6 4.7706 -1.6377 0.0123 18 8 2.2924 -1.0894 0.0069 19 1 -0.3633 -1.0276 0.0061 20 1 -0.3634 0.5192 0.8870 21 1 -0.3634 0.5086 -0.8930 22 1 1.9665 2.1205 -0.0007 23 1 3.8906 3.2540 0.0765 24 1 7.7063 3.0841 -3.0937 25 1 5.0561 -1.8546 1.0415 26 1 4.5112 -2.5663 -0.4963 27 1 5.6045 -1.1617 -0.5036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535679832.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -46.850767 kcal Electronic energy + Delta-G solvation = -12398.180888 eV Core-core repulsion = 10122.559613 eV Total energy + Delta-G solvation = -2275.621275 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.93896 -36.25044 -32.54385 -32.37950 -32.19787 -29.04747 -27.49161 -24.15275 -22.49514 -20.43699 -18.85735 -17.28681 -15.94760 -15.62469 -14.81382 -14.23157 -13.78712 -13.29785 -13.01624 -12.81915 -12.72249 -12.23865 -12.13859 -11.87279 -11.61361 -11.17743 -10.89155 -10.79239 -9.99952 -9.34552 -9.02596 -8.67166 -8.48842 -7.42703 -6.14029 -4.25740 2.32194 3.34875 3.43279 3.47099 3.50947 3.59929 4.48133 5.10858 5.18952 5.40897 5.62860 5.64301 5.67964 5.85700 5.90163 5.97891 6.00954 6.38581 6.42560 6.63651 6.84662 7.23594 7.31276 7.53281 7.85732 8.29701 8.81410 8.98867 9.48339 10.96166 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.048410 B = 0.011394 C = 0.010725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.250865 B = 2456.916310 C = 2610.083902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.043 4.043 3 C -0.193 4.193 4 C -0.154 4.154 5 C 0.251 3.749 6 H 0.069 0.931 7 O -0.582 6.582 8 C -0.551 4.551 9 H 0.074 0.926 10 C 0.082 3.918 11 N -0.891 5.891 12 Si 0.912 3.088 13 H -0.278 1.278 14 H -0.268 1.268 15 H -0.304 1.304 16 C -0.034 4.034 17 C -0.067 4.067 18 O -0.185 6.185 19 H 0.068 0.932 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.140 0.860 23 H 0.362 0.638 24 H 0.266 0.734 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -4.725 6.088 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.092 4.092 3 C -0.213 4.213 4 C -0.155 4.155 5 C 0.194 3.806 6 H 0.086 0.914 7 O -0.388 6.388 8 C -0.588 4.588 9 H 0.092 0.908 10 C -0.123 4.123 11 N -0.528 5.528 12 Si 0.741 3.259 13 H -0.204 1.204 14 H -0.193 1.193 15 H -0.232 1.232 16 C -0.083 4.083 17 C -0.123 4.123 18 O -0.083 6.083 19 H 0.087 0.913 20 H 0.096 0.904 21 H 0.097 0.903 22 H 0.158 0.842 23 H 0.209 0.791 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.780 -5.138 6.402 11.310 hybrid contribution 0.091 0.803 0.043 0.809 sum -7.689 -4.335 6.445 10.929 Atomic orbital electron populations 1.20155 0.85892 1.03085 1.02912 1.22129 0.93477 0.84591 1.09030 1.21300 0.92588 0.98918 1.08454 1.21279 0.96987 0.93784 1.03494 1.18414 0.87996 0.79613 0.94553 0.91386 1.86366 1.61163 1.32598 1.58682 1.21448 1.11677 1.34098 0.91598 0.90777 1.25033 0.96453 0.94887 0.95900 1.69957 1.24131 1.39356 1.19374 0.86276 0.76660 0.80651 0.82297 1.20356 1.19250 1.23208 1.22017 0.82544 0.94483 1.09268 1.20247 0.92441 0.97199 1.02441 1.83845 1.16658 1.34887 1.72921 0.91290 0.90400 0.90283 0.84170 0.79142 0.92466 0.91226 0.91577 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.42 36.00 0.37 -0.40 15 2 C -0.04 -0.76 7.32 -35.62 -0.26 -1.02 15 3 C -0.19 -3.81 10.12 -39.70 -0.40 -4.21 15 4 C -0.15 -3.43 5.21 -104.74 -0.55 -3.98 15 5 C 0.25 6.19 2.32 -29.03 -0.07 6.12 15 6 H 0.07 1.70 7.07 -51.93 -0.37 1.34 15 7 O -0.58 -13.82 10.85 -35.23 -0.38 -14.20 15 8 C -0.55 -15.55 9.33 -34.44 -0.32 -15.87 15 9 H 0.07 2.30 7.98 -52.49 -0.42 1.88 15 10 C 0.08 2.36 5.47 -17.82 -0.10 2.26 15 11 N -0.89 -27.09 13.96 55.43 0.77 -26.31 15 12 Si 0.91 23.14 26.18 -169.99 -4.45 18.69 15 13 H -0.28 -7.05 7.11 56.52 0.40 -6.65 15 14 H -0.27 -6.71 6.54 56.52 0.37 -6.34 15 15 H -0.30 -7.61 7.11 56.52 0.40 -7.21 15 16 C -0.03 -0.70 7.32 -35.63 -0.26 -0.97 15 17 C -0.07 -1.14 10.11 36.00 0.36 -0.78 15 18 O -0.18 -3.60 10.65 5.70 0.06 -3.54 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 20 H 0.08 0.80 8.14 -51.92 -0.42 0.38 15 21 H 0.08 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.14 2.46 7.63 -52.49 -0.40 2.06 15 23 H 0.36 7.61 8.25 45.56 0.38 7.99 15 24 H 0.27 7.57 8.31 -40.82 -0.34 7.23 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.10 1.83 7.87 -51.93 -0.41 1.42 15 LS Contribution 237.83 15.07 3.58 3.58 Total: -1.00 -32.46 237.83 -4.13 -36.59 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -2.50 Total: 4.02 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.22 Total: -18.83 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.77 Total: -26.31 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.32 Total: -17.74 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.45 Total: 18.69 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.46 -4.13 -36.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535679832.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.262 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds