Wall clock time and date at job start Mon Mar 30 2020 01:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34522 * 125.78536 * 2 1 4 4 C 1.41391 * 106.83584 * 180.11597 * 3 2 1 5 5 C 1.50699 * 126.57402 * 179.83496 * 4 3 2 6 6 H 1.09000 * 109.46916 * 144.69114 * 5 4 3 7 7 O 1.42895 * 109.47485 * 24.68663 * 5 4 3 8 8 C 1.50706 * 109.46824 * 264.68447 * 5 4 3 9 9 H 1.07999 * 120.00193 * 0.02562 * 8 5 4 10 10 C 1.37879 * 119.99398 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99350 * 180.02562 * 10 8 5 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 5 13 13 H 1.48493 * 109.47326 * 270.00340 * 12 10 8 14 14 H 1.48506 * 109.46545 * 30.00090 * 12 10 8 15 15 H 1.48498 * 109.47210 * 149.99801 * 12 10 8 16 16 C 1.34511 * 106.84071 * 359.57278 * 4 3 2 17 17 C 1.50697 * 125.78784 * 180.29533 * 16 4 3 18 18 O 1.34301 * 125.79131 * 179.63757 * 2 1 3 19 19 H 1.08994 * 109.47219 * 180.33960 * 1 2 3 20 20 H 1.09008 * 109.47082 * 300.34176 * 1 2 3 21 21 H 1.09003 * 109.47228 * 60.33945 * 1 2 3 22 22 H 1.07995 * 126.58427 * 359.95277 * 3 2 1 23 23 H 0.96698 * 114.00355 * 300.00283 * 7 5 4 24 24 H 0.97005 * 119.99661 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.47098 * 90.00396 * 17 16 4 26 26 H 1.09005 * 109.47020 * 210.00200 * 17 16 4 27 27 H 1.09001 * 109.47440 * 330.00000 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0913 0.0000 4 6 3.6309 0.6321 -0.0027 5 6 4.8731 1.4852 -0.0073 6 1 5.6489 1.0004 0.5855 7 8 4.5744 2.7648 0.5542 8 6 5.3581 1.6588 -1.4236 9 1 4.8202 1.1979 -2.2389 10 6 6.4884 2.4061 -1.6784 11 7 6.9113 2.5580 -2.9144 12 14 7.4191 3.2027 -0.2682 13 1 6.8769 4.5632 -0.0231 14 1 7.2612 2.3786 0.9571 15 1 8.8592 3.2993 -0.6175 16 6 3.5814 -0.7121 0.0054 17 6 4.7706 -1.6377 0.0123 18 8 2.2924 -1.0894 0.0069 19 1 -0.3633 -1.0276 0.0061 20 1 -0.3634 0.5192 0.8870 21 1 -0.3634 0.5086 -0.8930 22 1 1.9665 2.1205 -0.0007 23 1 3.8906 3.2540 0.0765 24 1 7.7063 3.0841 -3.0937 25 1 5.0561 -1.8546 1.0415 26 1 4.5112 -2.5663 -0.4963 27 1 5.6045 -1.1617 -0.5036 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535679832.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:28 Heat of formation + Delta-G solvation = -70.486900 kcal Electronic energy + Delta-G solvation = -12399.205828 eV Core-core repulsion = 10122.559613 eV Total energy + Delta-G solvation = -2276.646215 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.44186 -38.14654 -34.51204 -33.98339 -33.76318 -30.31021 -29.46366 -25.71600 -24.29046 -21.98724 -20.52274 -19.37760 -17.49885 -17.14334 -16.84306 -16.01032 -15.54676 -15.02284 -14.57526 -14.11302 -14.06739 -13.69165 -13.56178 -13.38581 -13.15808 -13.08714 -12.79510 -12.36886 -11.90098 -11.46509 -10.89688 -10.81730 -10.24715 -8.94458 -8.38031 -6.53710 0.85923 1.40014 1.42981 1.57597 1.76586 2.11430 2.36200 2.94471 3.87489 3.95637 4.11021 4.18219 4.46704 4.61563 4.70835 4.76332 4.77408 4.87883 5.03298 5.12335 5.39639 5.43766 5.53010 5.71822 6.08639 6.33324 6.58049 7.05546 7.25965 8.76213 Molecular weight = 196.09amu Principal moments of inertia in cm(-1) A = 0.048410 B = 0.011394 C = 0.010725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.250865 B = 2456.916310 C = 2610.083902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.031 4.031 3 C -0.221 4.221 4 C -0.193 4.193 5 C 0.263 3.737 6 H 0.063 0.937 7 O -0.583 6.583 8 C -0.549 4.549 9 H 0.031 0.969 10 C 0.033 3.967 11 N -0.935 5.935 12 Si 0.974 3.026 13 H -0.274 1.274 14 H -0.261 1.261 15 H -0.297 1.297 16 C -0.044 4.044 17 C -0.067 4.067 18 O -0.188 6.188 19 H 0.085 0.915 20 H 0.102 0.898 21 H 0.095 0.905 22 H 0.155 0.845 23 H 0.373 0.627 24 H 0.270 0.730 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 -4.983 7.545 13.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.240 4.240 4 C -0.195 4.195 5 C 0.205 3.795 6 H 0.081 0.919 7 O -0.390 6.390 8 C -0.587 4.587 9 H 0.050 0.950 10 C -0.167 4.167 11 N -0.574 5.574 12 Si 0.801 3.199 13 H -0.199 1.199 14 H -0.186 1.186 15 H -0.225 1.225 16 C -0.093 4.093 17 C -0.123 4.123 18 O -0.086 6.086 19 H 0.104 0.896 20 H 0.120 0.880 21 H 0.114 0.886 22 H 0.173 0.827 23 H 0.222 0.778 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.896 -5.399 7.861 13.041 hybrid contribution 0.324 0.845 -0.462 1.016 sum -8.572 -4.554 7.398 12.205 Atomic orbital electron populations 1.20423 0.81710 1.04880 1.04854 1.23115 0.95632 0.83417 1.05853 1.21552 0.91888 1.00454 1.10152 1.21246 0.97251 0.94670 1.06286 1.18066 0.89214 0.80311 0.91913 0.91899 1.86293 1.61771 1.32414 1.58566 1.21583 1.11238 1.33285 0.92596 0.95039 1.25815 0.97362 0.95480 0.98068 1.70064 1.25096 1.40776 1.21417 0.85292 0.75616 0.79660 0.79333 1.19942 1.18579 1.22467 1.22493 0.83730 0.94607 1.08456 1.20322 0.90592 0.97294 1.04086 1.83875 1.16379 1.35604 1.72771 0.89597 0.87965 0.88623 0.82740 0.77847 0.92081 0.88707 0.89314 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.42 71.23 0.74 -0.55 15 2 C -0.03 -1.02 7.32 24.83 0.18 -0.84 15 3 C -0.22 -8.48 10.12 22.20 0.22 -8.25 15 4 C -0.19 -8.56 5.21 -19.94 -0.10 -8.67 15 5 C 0.26 12.92 2.32 29.10 0.07 12.99 15 6 H 0.06 3.14 7.07 -2.39 -0.02 3.12 15 7 O -0.58 -27.09 10.85 -148.98 -1.62 -28.71 15 8 C -0.55 -31.71 9.33 25.60 0.24 -31.48 15 9 H 0.03 2.04 7.98 -2.91 -0.02 2.01 15 10 C 0.03 1.93 5.47 84.66 0.46 2.39 15 11 N -0.93 -57.90 13.96 21.45 0.30 -57.60 15 12 Si 0.97 47.59 26.18 68.60 1.80 49.38 15 13 H -0.27 -13.14 7.11 99.48 0.71 -12.44 15 14 H -0.26 -12.41 6.54 99.48 0.65 -11.76 15 15 H -0.30 -14.08 7.11 99.48 0.71 -13.37 15 16 C -0.04 -1.77 7.32 24.83 0.18 -1.59 15 17 C -0.07 -2.22 10.11 71.24 0.72 -1.50 15 18 O -0.19 -7.01 10.65 -2.50 -0.03 -7.04 15 19 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.10 1.68 8.14 -2.38 -0.02 1.66 15 21 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.15 5.23 7.63 -2.91 -0.02 5.21 15 23 H 0.37 15.40 8.25 -74.06 -0.61 14.79 15 24 H 0.27 15.59 8.31 -92.70 -0.77 14.82 15 25 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 26 H 0.09 2.49 8.14 -2.38 -0.02 2.47 15 27 H 0.08 2.92 7.87 -2.39 -0.02 2.90 15 Total: -1.00 -69.90 237.83 3.67 -66.22 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.50 Total: 15.23 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 2.72 Total: -37.49 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.30 Total: -57.60 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -1.64 Total: -35.75 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.80 Total: 49.38 kcal Total: -69.90 3.67 -66.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535679832.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.264 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds