Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47238 * 2 1 4 4 C 1.34946 * 126.03722 * 124.99741 * 3 2 1 5 5 C 1.35312 * 107.74687 * 180.02562 * 4 3 2 6 6 C 1.39865 * 107.91958 * 0.02562 * 5 4 3 7 7 C 1.50707 * 125.89710 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.46649 * 244.99441 * 7 6 5 9 9 O 1.42895 * 109.47045 * 4.99793 * 7 6 5 10 10 C 1.50695 * 109.47014 * 124.99898 * 7 6 5 11 11 H 1.08004 * 120.00546 * 0.27454 * 10 7 6 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 7 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00131 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00224 * 14 12 10 18 18 N 1.30840 * 108.20559 * 0.26034 * 6 5 4 19 19 H 1.09001 * 109.46942 * 299.99185 * 1 2 3 20 20 H 1.08994 * 109.47324 * 59.99607 * 1 2 3 21 21 H 1.09004 * 109.46705 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46942 * 240.00814 * 2 1 3 23 23 H 1.08998 * 109.47785 * 120.00256 * 2 1 3 24 24 H 1.08004 * 126.12394 * 0.04611 * 4 3 2 25 25 H 1.08004 * 126.03816 * 180.02562 * 5 4 3 26 26 H 0.96696 * 114.00520 * 60.00051 * 9 7 6 27 27 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0713 3.2137 0.5464 6 6 2.3112 3.4729 -0.5988 7 6 2.2339 4.7890 -1.3289 8 1 1.2212 5.1854 -1.2570 9 8 3.1506 5.7143 -0.7412 10 6 2.5901 4.5810 -2.7783 11 1 2.8425 3.5937 -3.1362 12 6 2.5878 5.6502 -3.6491 13 7 2.2753 6.8514 -3.2145 14 14 3.0300 5.3925 -5.4456 15 1 3.3407 3.9592 -5.6783 16 1 1.8842 5.7952 -6.3000 17 1 4.2162 6.2183 -5.7867 18 7 1.6750 2.3768 -0.9238 19 1 -0.3633 0.5137 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 3.3192 1.4124 1.7357 25 1 3.7045 3.9205 1.0622 26 1 4.0731 5.4260 -0.7697 27 1 2.2740 7.6036 -3.8270 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535701408.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = 23.105392 kcal Electronic energy + Delta-G solvation = -12175.419568 eV Core-core repulsion = 9935.124570 eV Total energy + Delta-G solvation = -2240.294998 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.41038 -35.70262 -33.74791 -32.08774 -30.02624 -28.64174 -26.79356 -23.78951 -22.10890 -20.33766 -18.83325 -16.96577 -16.52615 -15.03442 -14.53540 -14.30204 -13.95876 -13.43587 -13.22620 -12.59766 -12.20093 -11.97212 -11.86983 -11.18578 -11.16504 -10.88353 -10.79711 -10.10392 -9.70806 -9.30208 -8.75060 -8.41221 -8.16838 -7.79530 -5.95232 -4.10904 2.57915 3.11706 3.32922 3.40155 3.45758 3.72112 4.47584 4.77088 5.10965 5.22543 5.30581 5.32660 5.62203 5.71018 5.95435 6.17172 6.26475 6.41237 6.54917 6.79369 7.50361 7.62722 7.71985 7.92076 8.19722 8.58379 8.93915 9.39502 9.62981 11.09288 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.044247 B = 0.010183 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.666414 B = 2749.077500 C = 3138.029832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 N -0.393 5.393 4 C 0.030 3.970 5 C -0.266 4.266 6 C 0.078 3.922 7 C 0.298 3.702 8 H 0.075 0.925 9 O -0.555 6.555 10 C -0.551 4.551 11 H 0.059 0.941 12 C 0.077 3.923 13 N -0.863 5.863 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 N -0.286 5.286 19 H 0.057 0.943 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.161 0.839 25 H 0.142 0.858 26 H 0.349 0.651 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -11.181 6.934 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.176 5.176 4 C -0.115 4.115 5 C -0.296 4.296 6 C -0.089 4.089 7 C 0.239 3.761 8 H 0.092 0.908 9 O -0.356 6.356 10 C -0.590 4.590 11 H 0.078 0.922 12 C -0.129 4.129 13 N -0.499 5.499 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 N -0.109 5.109 19 H 0.076 0.924 20 H 0.091 0.909 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.103 0.897 24 H 0.178 0.822 25 H 0.160 0.840 26 H 0.193 0.807 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.119 -11.351 6.195 12.980 hybrid contribution 1.341 -0.232 -0.428 1.427 sum 0.222 -11.583 5.767 12.941 Atomic orbital electron populations 1.22037 0.94365 1.02032 1.03740 1.21446 0.95714 0.78745 1.02647 1.48836 1.36540 1.09922 1.22322 1.22334 0.97247 0.95290 0.96626 1.21383 1.10093 0.95994 1.02114 1.24284 0.93475 0.97074 0.94097 1.17852 0.91418 0.78008 0.88867 0.90765 1.86579 1.18450 1.47918 1.82701 1.21559 1.49449 0.94819 0.93129 0.92246 1.25043 0.94178 0.95065 0.98583 1.70084 1.45927 0.99146 1.34751 0.86538 0.78081 0.78295 0.85032 1.19760 1.20871 1.20902 1.77408 1.24598 0.96569 1.12296 0.92364 0.90861 0.91422 0.90566 0.89662 0.82182 0.84031 0.80663 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 10.09 37.16 0.37 -1.59 15 2 C 0.14 1.73 7.23 -4.04 -0.03 1.70 15 3 N -0.39 -7.07 3.68 -61.36 -0.23 -7.30 15 4 C 0.03 0.50 11.45 -17.23 -0.20 0.31 15 5 C -0.27 -5.28 10.00 -40.02 -0.40 -5.68 15 6 C 0.08 1.87 6.37 -82.40 -0.53 1.34 15 7 C 0.30 8.06 3.38 -29.03 -0.10 7.97 15 8 H 0.07 2.19 8.14 -51.93 -0.42 1.77 15 9 O -0.56 -14.55 12.17 -35.23 -0.43 -14.98 15 10 C -0.55 -15.89 8.72 -34.44 -0.30 -16.19 15 11 H 0.06 1.75 7.74 -52.48 -0.41 1.34 15 12 C 0.08 2.21 5.40 -17.82 -0.10 2.11 15 13 N -0.86 -25.86 12.84 55.43 0.71 -25.15 15 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 15 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 18 N -0.29 -6.60 12.38 33.67 0.42 -6.18 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.09 0.78 8.07 -51.93 -0.42 0.37 15 24 H 0.16 1.90 8.06 -52.48 -0.42 1.48 15 25 H 0.14 2.56 7.92 -52.48 -0.42 2.14 15 26 H 0.35 8.09 8.84 45.56 0.40 8.49 15 27 H 0.26 7.33 8.31 -40.82 -0.34 7.00 15 LS Contribution 244.21 15.07 3.68 3.68 Total: -1.00 -33.36 244.21 -4.65 -38.01 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.51 Total: 5.10 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.27 Total: -10.04 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.90 Total: -38.63 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.43 Total: -14.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.36 -4.65 -38.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535701408.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.116 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds