Wall clock time and date at job start Mon Mar 30 2020 02:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39874 * 125.89775 * 2 1 4 4 C 1.35307 * 107.91884 * 179.97438 * 3 2 1 5 5 C 1.50708 * 126.12862 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.46951 * 204.97375 * 5 4 3 7 7 O 1.42903 * 109.46514 * 324.97369 * 5 4 3 8 8 C 1.50700 * 109.47100 * 84.97357 * 5 4 3 9 9 H 1.07999 * 119.99816 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99828 * 180.02562 * 8 5 4 11 11 N 1.31514 * 119.99738 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 119.99716 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.47093 * 90.00200 * 12 10 8 14 14 H 1.48497 * 109.47051 * 209.99985 * 12 10 8 15 15 H 1.48498 * 109.47288 * 330.00018 * 12 10 8 16 16 N 1.34947 * 107.74824 * 359.97438 * 4 3 2 17 17 C 1.46506 * 126.03702 * 179.97438 * 16 4 3 18 18 N 1.30836 * 125.90118 * 180.30286 * 2 1 3 19 19 H 1.09000 * 109.46815 * 89.99759 * 1 2 3 20 20 H 1.09001 * 109.46853 * 209.99838 * 1 2 3 21 21 H 1.09000 * 109.47325 * 330.00170 * 1 2 3 22 22 H 1.07999 * 126.03656 * 359.97438 * 3 2 1 23 23 H 0.96700 * 114.00040 * 60.00693 * 7 5 4 24 24 H 0.97006 * 119.99424 * 179.97438 * 11 10 8 25 25 H 1.08999 * 109.46892 * 90.00531 * 17 16 4 26 26 H 1.09000 * 109.46803 * 209.99704 * 17 16 4 27 27 H 1.09000 * 109.47214 * 330.00497 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8351 1.5990 0.0013 6 1 5.6758 1.0573 -0.4322 7 8 4.5744 2.7721 -0.7719 8 6 5.1684 1.9941 1.4169 9 1 4.5570 1.6411 2.2342 10 6 6.2532 2.8071 1.6685 11 7 6.9973 3.2373 0.6731 12 14 6.6658 3.2974 3.4231 13 1 7.5932 2.2978 4.0114 14 1 7.3131 4.6339 3.4244 15 1 5.4193 3.3503 4.2285 16 7 3.6088 -0.6340 0.0015 17 6 4.7900 -1.5007 0.0018 18 7 2.2743 -1.0598 -0.0056 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.9923 2.1598 -0.0004 23 1 3.8370 3.3042 -0.4430 24 1 7.7603 3.8096 0.8501 25 1 5.0831 -1.7150 1.0296 26 1 4.5563 -2.4336 -0.5113 27 1 5.6093 -0.9984 -0.5124 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535770369.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:54 Heat of formation + Delta-G solvation = 17.317947 kcal Electronic energy + Delta-G solvation = -12355.711765 eV Core-core repulsion = 10115.165805 eV Total energy + Delta-G solvation = -2240.545960 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.48887 -35.69451 -33.30916 -32.27696 -29.83732 -28.96441 -26.66732 -24.78367 -23.01300 -19.50058 -18.72063 -17.15513 -16.15673 -14.78168 -14.71798 -14.34935 -13.68781 -13.16927 -13.08975 -12.52447 -12.49525 -12.05909 -11.72721 -11.65286 -11.22400 -11.03763 -10.97749 -10.28394 -10.00236 -9.41054 -8.80154 -8.56992 -8.23545 -7.66538 -6.15191 -4.35079 2.66482 3.20293 3.23878 3.28911 3.32868 3.53675 4.30876 5.09384 5.13977 5.48032 5.61127 5.67931 5.85161 5.91272 5.94040 6.10317 6.20003 6.35131 6.61187 6.71296 7.40478 7.47283 7.70129 7.77334 7.96883 8.47609 8.67900 9.18082 9.41131 10.88374 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043155 B = 0.010782 C = 0.010519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.663880 B = 2596.392392 C = 2661.131254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.063 3.937 3 C -0.291 4.291 4 C 0.108 3.892 5 C 0.284 3.716 6 H 0.068 0.932 7 O -0.552 6.552 8 C -0.565 4.565 9 H 0.059 0.941 10 C 0.082 3.918 11 N -0.857 5.857 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.272 1.272 16 N -0.374 5.374 17 C 0.108 3.892 18 N -0.327 5.327 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.138 0.862 23 H 0.353 0.647 24 H 0.264 0.736 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 -4.476 -0.422 7.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C -0.320 4.320 4 C -0.020 4.020 5 C 0.225 3.775 6 H 0.085 0.915 7 O -0.354 6.354 8 C -0.603 4.603 9 H 0.078 0.922 10 C -0.125 4.125 11 N -0.493 5.493 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.196 1.196 16 N -0.157 5.157 17 C -0.034 4.034 18 N -0.150 5.150 19 H 0.088 0.912 20 H 0.083 0.917 21 H 0.091 0.909 22 H 0.156 0.844 23 H 0.198 0.802 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.231 -5.955 -0.854 7.972 hybrid contribution -0.083 1.294 1.369 1.885 sum -5.314 -4.661 0.515 7.087 Atomic orbital electron populations 1.20059 0.87598 1.02507 1.02136 1.22142 0.96284 0.91365 1.00421 1.20873 0.91285 0.99066 1.20747 1.23023 0.99767 0.84436 0.94808 1.18093 0.85744 0.81431 0.92243 0.91478 1.86596 1.55011 1.37551 1.56259 1.21432 1.13616 1.33464 0.91778 0.92245 1.25031 0.95293 0.94935 0.97288 1.70068 1.16243 1.32225 1.30723 0.86544 0.78743 0.78023 0.84401 1.20412 1.20887 1.19641 1.48214 1.04776 1.04711 1.57960 1.21716 0.84487 0.94060 1.03111 1.77062 0.86834 1.23013 1.28114 0.91245 0.91677 0.90898 0.84433 0.80239 0.92628 0.91078 0.90431 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.45 36.01 0.38 -0.53 15 2 C 0.06 1.24 7.22 -82.40 -0.59 0.64 15 3 C -0.29 -6.14 10.10 -40.01 -0.40 -6.54 15 4 C 0.11 2.47 5.93 -82.26 -0.49 1.98 15 5 C 0.28 7.18 3.09 -29.03 -0.09 7.09 15 6 H 0.07 1.78 6.95 -51.93 -0.36 1.42 15 7 O -0.55 -14.08 12.61 -35.23 -0.44 -14.53 15 8 C -0.56 -15.21 8.75 -34.44 -0.30 -15.52 15 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 10 C 0.08 2.20 5.40 -17.82 -0.10 2.11 15 11 N -0.86 -24.32 12.84 55.43 0.71 -23.61 15 12 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 16 N -0.37 -7.96 4.01 -63.88 -0.26 -8.22 15 17 C 0.11 1.83 11.27 59.85 0.67 2.51 15 18 N -0.33 -6.87 12.58 33.67 0.42 -6.45 15 19 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 21 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 22 H 0.14 2.64 7.58 -52.49 -0.40 2.25 15 23 H 0.35 7.95 8.19 45.56 0.37 8.32 15 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 27 H 0.09 1.45 6.98 -51.93 -0.36 1.08 15 LS Contribution 241.55 15.07 3.64 3.64 Total: -1.00 -31.57 241.55 -4.27 -35.84 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.40 Total: 5.92 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.92 Total: -8.26 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.88 Total: -38.28 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.44 Total: -14.53 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.57 -4.27 -35.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535770369.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.157 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds